Variant report

Variant	rs12801976
Chromosome Location	chr11:57738992-57738993
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1113334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1113335	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11600060	0.83[CEU][hapmap]
rs11601202	0.96[AFR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11601223	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11601663	0.96[AFR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11601841	0.87[CEU][hapmap]
rs11602442	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11604473	0.83[CEU][hapmap]
rs11604630	0.83[CEU][hapmap]
rs11605988	0.88[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11606464	0.88[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11607308	0.85[ASN][1000 genomes]
rs11608016	0.96[AFR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12419176	0.92[EUR][1000 genomes]
rs12421773	0.90[EUR][1000 genomes]
rs12788836	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12790525	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs12792435	0.88[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12792638	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12803905	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12804093	0.83[EUR][1000 genomes]
rs12805812	0.87[CEU][hapmap]
rs1376489	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs1397273	0.91[EUR][1000 genomes]
rs17152376	0.87[CEU][hapmap]
rs1814059	0.87[CEU][hapmap]
rs2089747	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2441952	0.80[CEU][hapmap]
rs34015013	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34300518	0.85[ASN][1000 genomes]
rs34563263	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34594669	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35163247	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35713433	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35742790	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36071925	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4509781	0.91[CEU][hapmap]
rs56055377	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs609154	0.89[EUR][1000 genomes]
rs61903966	0.88[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs61903967	0.88[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs61904009	0.90[ASN][1000 genomes]
rs61904011	0.85[ASN][1000 genomes]
rs61904024	0.85[ASN][1000 genomes]
rs61905309	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66813766	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7109912	0.92[EUR][1000 genomes]
rs7113760	0.87[CEU][hapmap]
rs7120442	0.87[CEU][hapmap]
rs7121128	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123570	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7123727	0.88[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7126334	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs714942	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7926878	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7927022	0.83[EUR][1000 genomes]
rs7929515	0.94[AFR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7930102	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs7930234	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7934184	0.87[CEU][hapmap]
rs7935428	0.87[CEU][hapmap]
rs7936212	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7938062	0.87[CEU][hapmap]
rs7945154	0.85[CEU][hapmap]
rs7949558	0.83[CEU][hapmap]
rs7950003	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs930703	0.87[CEU][hapmap]
rs938011	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv897589	chr11:57623815-58052357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv517822	chr11:57728993-57751001	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57735800-57739800	Enhancers	HepG2	liver
2	chr11:57738800-57739000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:57738800-57740200	Weak transcription	Pancreas	Pancrea
4	chr11:57738800-57740400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:57738800-57745200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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