Variant report

Variant	rs7951607
Chromosome Location	chr11:76446364-76446365
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:76445248..76448071-chr11:76628717..76631883,4	MCF-7	breast:
2	chr11:76444321..76446462-chr11:76517342..76520030,2	K562	blood:
3	chr11:76445987..76448531-chr11:76494334..76496063,4	MCF-7	breast:
4	chr11:76446132..76447728-chr11:76448521..76450951,2	K562	blood:
5	chr11:76443783..76447678-chr11:76493146..76497317,7	MCF-7	breast:
6	chr11:76445009..76450493-chr11:76452594..76458852,7	K562	blood:
7	chr11:76444941..76447137-chr11:76494986..76497317,3	K562	blood:
8	chr11:76444817..76447367-chr11:76477489..76481018,3	MCF-7	breast:
9	chr11:76445665..76448359-chr11:76459229..76461438,2	K562	blood:
10	chr11:76445752..76447427-chr11:76492585..76495456,2	K562	blood:
11	chr11:76444941..76446826-chr11:76495647..76497317,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000255100	Chromatin interaction
ENSG00000254632	Chromatin interaction
ENSG00000182704	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10793190	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899270	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10899272	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11236912	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11236916	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12718489	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4393347	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7109101	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7118639	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7924970	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7925717	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7935963	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7936177	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7938883	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7942580	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7949215	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7950053	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7952109	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs948454	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs948455	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1810781	chr11:76311021-76464814	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv1850014	chr11:76384895-76464814	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv976471	chr11:76435262-76459660	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv430404	chr11:76436952-76462852	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76433400-76456400	Weak transcription	Right Atrium	heart
2	chr11:76441400-76450200	Weak transcription	Liver	Liver
3	chr11:76445000-76446800	Enhancers	K562	blood
4	chr11:76445200-76446400	Enhancers	Fetal Muscle Trunk	muscle
5	chr11:76445200-76446600	Enhancers	Colon Smooth Muscle	Colon
6	chr11:76445200-76446800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr11:76445200-76446800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr11:76445200-76448000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr11:76445200-76448800	Enhancers	A549	lung
10	chr11:76445400-76448000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:76445600-76446800	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr11:76445600-76446800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr11:76445600-76447200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:76445600-76447200	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr11:76445600-76447400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:76445600-76447800	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr11:76445600-76448200	Enhancers	Placenta	Placenta
18	chr11:76445600-76450600	Enhancers	Fetal Heart	heart
19	chr11:76445800-76446400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr11:76445800-76446600	Enhancers	Fetal Stomach	stomach
21	chr11:76445800-76447200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr11:76445800-76448000	Enhancers	H1 Cell Line	embryonic stem cell
23	chr11:76445800-76449200	Enhancers	Fetal Brain Male	brain
24	chr11:76446000-76446400	Enhancers	Brain Cingulate Gyrus	brain
25	chr11:76446000-76446400	Enhancers	Fetal Lung	lung
26	chr11:76446000-76446400	Enhancers	Stomach Smooth Muscle	stomach
27	chr11:76446000-76446600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr11:76446000-76446800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:76446000-76446800	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr11:76446000-76446800	Enhancers	Adipose Nuclei	Adipose
31	chr11:76446000-76446800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr11:76446000-76447200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr11:76446000-76447800	Enhancers	Fetal Brain Female	brain
34	chr11:76446000-76448000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr11:76446000-76448000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr11:76446000-76450400	Enhancers	Fetal Muscle Leg	muscle
37	chr11:76446200-76446400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
38	chr11:76446200-76446600	Bivalent Enhancer	HepG2	liver
39	chr11:76446200-76446800	Weak transcription	Fetal Intestine Large	intestine
40	chr11:76446200-76447200	Weak transcription	Fetal Intestine Small	intestine
41	chr11:76446200-76447400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr11:76446200-76447400	Enhancers	H9 Cell Line	embryonic stem cell
43	chr11:76446200-76449000	Weak transcription	Fetal Thymus	thymus

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