Variant report

Variant	rs7956920
Chromosome Location	chr12:66787724-66787725
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10784526	0.88[YRI][hapmap]
rs2270594	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3960132	0.80[AFR][1000 genomes]
rs7486003	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7962153	0.95[ASN][1000 genomes]
rs7969948	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052503	chr12:66293898-67269495	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv541515	chr12:66293898-67269495	Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv1051713	chr12:66745716-66889411	Strong transcription Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1040682	chr12:66750103-67328053	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv832447	chr12:66785814-66990029	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:66710200-66792800	Weak transcription	Fetal Kidney	kidney
2	chr12:66738000-66792800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr12:66775200-66793000	Weak transcription	Esophagus	oesophagus
4	chr12:66780800-66792800	Weak transcription	Colon Smooth Muscle	Colon
5	chr12:66781400-66792000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr12:66781600-66792800	Weak transcription	Adipose Nuclei	Adipose
7	chr12:66782000-66787800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr12:66782200-66792800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr12:66782800-66812600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr12:66784000-66788000	Weak transcription	Pancreas	Pancrea
11	chr12:66784200-66796000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr12:66786200-66792600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr12:66786200-66792600	Weak transcription	Brain Germinal Matrix	brain
14	chr12:66786200-66801000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr12:66786200-66801200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr12:66786400-66801200	Weak transcription	Placenta	Placenta
17	chr12:66786600-66791800	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr12:66786600-66791800	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr12:66786600-66803000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr12:66787200-66788200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr12:66787200-66788200	Enhancers	Fetal Thymus	thymus
22	chr12:66787200-66788600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr12:66787200-66788600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr12:66787200-66788800	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr12:66787200-66788800	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr12:66787200-66788800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
27	chr12:66787200-66789000	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr12:66787400-66788000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
29	chr12:66787400-66788000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
30	chr12:66787400-66788000	Bivalent Enhancer	Dnd41	blood
31	chr12:66787400-66788400	Flanking Active TSS	Primary T cells from cord blood	blood
32	chr12:66787400-66788400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr12:66787400-66788600	Enhancers	Primary T cells fromperipheralblood	blood
34	chr12:66787400-66791600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr12:66787600-66787800	Flanking Bivalent TSS/Enh	Primary T killer memory cells from peripheral blood	blood
36	chr12:66787600-66787800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
37	chr12:66787600-66787800	Enhancers	Thymus	Thymus
38	chr12:66787600-66788000	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr12:66787600-66788600	Enhancers	Fetal Brain Female	brain
40	chr12:66787600-66791000	Weak transcription	Fetal Brain Male	brain

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