Variant report

Variant	rs7962153
Chromosome Location	chr12:66783811-66783812
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10878400	1.00[TSI][hapmap]
rs17102438	0.83[ASN][1000 genomes]
rs2270594	1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.95[ASN][1000 genomes]
rs6421219	0.90[YRI][hapmap]
rs7486003	0.95[ASN][1000 genomes]
rs7956920	1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[ASN][1000 genomes]
rs7969948	0.95[ASN][1000 genomes]
rs7970076	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052503	chr12:66293898-67269495	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv541515	chr12:66293898-67269495	Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv1051713	chr12:66745716-66889411	Strong transcription Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1040682	chr12:66750103-67328053	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:66710200-66792800	Weak transcription	Fetal Kidney	kidney
2	chr12:66738000-66792800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr12:66743000-66787600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr12:66763600-66785200	Weak transcription	Brain Germinal Matrix	brain
5	chr12:66764200-66787200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr12:66765800-66786000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr12:66766200-66785800	Weak transcription	Fetal Brain Female	brain
8	chr12:66771000-66785000	Weak transcription	Placenta	Placenta
9	chr12:66775200-66793000	Weak transcription	Esophagus	oesophagus
10	chr12:66780800-66792800	Weak transcription	Colon Smooth Muscle	Colon
11	chr12:66781200-66785400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr12:66781200-66785400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr12:66781200-66786000	Weak transcription	Fetal Brain Male	brain
14	chr12:66781400-66785000	Weak transcription	Primary T cells from cord blood	blood
15	chr12:66781400-66785600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr12:66781400-66792000	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr12:66781600-66785000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr12:66781600-66792800	Weak transcription	Adipose Nuclei	Adipose
19	chr12:66781800-66785200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr12:66782000-66787800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr12:66782200-66792800	Weak transcription	Stomach Smooth Muscle	stomach
22	chr12:66782800-66812600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr12:66783200-66786000	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr12:66783400-66786000	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr12:66783800-66784000	ZNF genes & repeats	Pancreas	Pancrea

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