Variant report

Variant	rs17102438
Chromosome Location	chr12:66777929-66777930
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:66774714..66776959-chr12:66777282..66778823,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2270594	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs4344534	0.85[ASN][1000 genomes]
rs73331052	0.85[ASN][1000 genomes]
rs7956920	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs7962153	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052503	chr12:66293898-67269495	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv541515	chr12:66293898-67269495	Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv1051713	chr12:66745716-66889411	Strong transcription Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1040682	chr12:66750103-67328053	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:66710200-66792800	Weak transcription	Fetal Kidney	kidney
2	chr12:66738000-66792800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr12:66743000-66787600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr12:66760200-66783200	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr12:66763600-66785200	Weak transcription	Brain Germinal Matrix	brain
6	chr12:66764200-66787200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr12:66764800-66780800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr12:66764800-66780800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr12:66765800-66780800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr12:66765800-66786000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr12:66766200-66785800	Weak transcription	Fetal Brain Female	brain
12	chr12:66769000-66780800	Weak transcription	Pancreas	Pancrea
13	chr12:66770800-66778800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr12:66771000-66785000	Weak transcription	Placenta	Placenta
15	chr12:66771800-66780800	Weak transcription	Primary T cells from cord blood	blood
16	chr12:66773200-66780800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr12:66773200-66782200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr12:66775200-66793000	Weak transcription	Esophagus	oesophagus
19	chr12:66775800-66780800	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr12:66775800-66780800	Weak transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links