Variant report

Variant	rs7958003
Chromosome Location	chr12:86340563-86340564
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10863107	1.00[ASN][1000 genomes]
rs11117088	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11117093	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11117105	1.00[ASN][1000 genomes]
rs11117106	1.00[ASN][1000 genomes]
rs11608371	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17348032	1.00[ASN][1000 genomes]
rs34315119	1.00[ASN][1000 genomes]
rs34664635	1.00[ASN][1000 genomes]
rs35629197	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs728753	1.00[ASN][1000 genomes]
rs73177154	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73177156	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73177184	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73187656	0.81[EUR][1000 genomes]
rs73187675	0.81[EUR][1000 genomes]
rs7485871	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv1797806	chr12:86198935-86425608	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv559667	chr12:86318004-86416212	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86339400-86340800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
2	chr12:86339600-86340600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
3	chr12:86339600-86341200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
4	chr12:86339800-86342800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr12:86340000-86341400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
6	chr12:86340200-86340800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
7	chr12:86340400-86340600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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