Variant report

Variant	rs7958778
Chromosome Location	chr12:10330802-10330803
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1050283	0.80[CEU][hapmap]
rs12311169	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2537777	0.96[CEU][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap];0.85[YRI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2537778	0.88[ASW][hapmap];0.96[CEU][hapmap];0.88[LWK][hapmap];0.88[MEX][hapmap];0.81[TSI][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2537779	0.93[YRI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2634164	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2742113	0.83[MEX][hapmap]
rs6488265	0.91[CEU][hapmap];0.83[MEX][hapmap];0.82[EUR][1000 genomes]
rs7296800	0.95[CEU][hapmap];0.96[YRI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7300650	0.87[ASW][hapmap];0.96[CEU][hapmap];0.81[TSI][hapmap];0.91[YRI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7305138	0.92[MEX][hapmap]
rs7315498	0.87[ASW][hapmap];0.96[CEU][hapmap];0.88[MEX][hapmap];0.81[TSI][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10321800-10331200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr12:10325400-10335000	Weak transcription	A549	lung
3	chr12:10326200-10334800	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr12:10328800-10331400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr12:10329000-10331200	Weak transcription	Hela-S3	cervix
6	chr12:10329600-10331400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr12:10329600-10339000	Weak transcription	Fetal Intestine Large	intestine
8	chr12:10330000-10331200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr12:10330000-10331600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr12:10330200-10331200	Weak transcription	Fetal Intestine Small	intestine
11	chr12:10330200-10331200	Weak transcription	NHEK	skin
12	chr12:10330200-10332400	Weak transcription	HMEC	breast
13	chr12:10330600-10331000	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr12:10330600-10331400	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr12:10330600-10333200	Enhancers	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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