Variant report

Variant	rs7305138
Chromosome Location	chr12:10331233-10331234
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2010655	0.91[CHB][hapmap]
rs2537778	0.84[MEX][hapmap]
rs2634162	1.00[YRI][hapmap]
rs2742110	0.80[MEX][hapmap]
rs2742113	0.84[MEX][hapmap]
rs2742115	0.95[CHB][hapmap];0.85[GIH][hapmap];0.84[MEX][hapmap];1.00[YRI][hapmap]
rs3741860	0.95[CHB][hapmap];0.88[GIH][hapmap];0.88[MEX][hapmap]
rs7315498	0.80[MEX][hapmap]
rs7958778	0.92[MEX][hapmap]
rs9300224	1.00[CHB][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7305138	OLR1	cis	multi-tissue	Pritchard

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10325400-10335000	Weak transcription	A549	lung
2	chr12:10326200-10334800	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr12:10328800-10331400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr12:10329600-10331400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr12:10329600-10339000	Weak transcription	Fetal Intestine Large	intestine
6	chr12:10330000-10331600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr12:10330200-10332400	Weak transcription	HMEC	breast
8	chr12:10330600-10331400	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr12:10330600-10333200	Enhancers	Placenta	Placenta
10	chr12:10331000-10334600	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr12:10331200-10331600	Enhancers	Hela-S3	cervix
12	chr12:10331200-10332600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr12:10331200-10332800	Enhancers	Fetal Intestine Small	intestine
14	chr12:10331200-10333000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr12:10331200-10333400	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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