Variant report

Variant	rs9300224
Chromosome Location	chr12:10330155-10330156
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10845055	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11053653	0.90[ASN][1000 genomes]
rs2010655	0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs2634159	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2634160	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2634162	1.00[CEU][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2742107	0.93[ASN][1000 genomes]
rs2742108	0.93[ASN][1000 genomes]
rs2742110	0.90[JPT][hapmap]
rs2742113	0.90[JPT][hapmap]
rs2742114	0.91[JPT][hapmap]
rs2742115	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3741860	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4103869	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs71457827	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7305138	1.00[CHB][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10321800-10331200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr12:10325400-10330600	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr12:10325400-10330600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr12:10325400-10335000	Weak transcription	A549	lung
5	chr12:10326200-10334800	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr12:10327600-10330200	Enhancers	Fetal Intestine Small	intestine
7	chr12:10327800-10330200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr12:10328600-10330600	Weak transcription	Placenta	Placenta
9	chr12:10328800-10331400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr12:10329000-10330200	Enhancers	HMEC	breast
11	chr12:10329000-10331200	Weak transcription	Hela-S3	cervix
12	chr12:10329200-10330200	Enhancers	NHEK	skin
13	chr12:10329600-10331400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr12:10329600-10339000	Weak transcription	Fetal Intestine Large	intestine
15	chr12:10330000-10331200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr12:10330000-10331600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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