Variant report

Variant	rs2634162
Chromosome Location	chr12:10323630-10323631
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10845054	0.82[AMR][1000 genomes]
rs10845055	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11053653	0.82[ASN][1000 genomes]
rs12581931	0.82[AMR][1000 genomes]
rs2010655	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs2634159	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2634160	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2742107	0.81[ASN][1000 genomes]
rs2742108	0.81[ASN][1000 genomes]
rs2742110	1.00[CHB][hapmap];0.91[JPT][hapmap];0.97[ASN][1000 genomes]
rs2742112	0.97[ASN][1000 genomes]
rs2742113	1.00[CHB][hapmap];0.91[JPT][hapmap];0.99[ASN][1000 genomes]
rs2742114	1.00[CHB][hapmap];0.91[JPT][hapmap];0.99[ASN][1000 genomes]
rs2742115	1.00[CEU][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3741860	1.00[CEU][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4103869	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71457827	0.83[AMR][1000 genomes]
rs7305138	1.00[YRI][hapmap]
rs9300224	1.00[CEU][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10319200-10326200	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr12:10321800-10324800	Weak transcription	NHLF	lung
3	chr12:10321800-10331200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr12:10322000-10327600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr12:10322200-10324400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr12:10322800-10325400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr12:10323000-10327200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr12:10323200-10324000	Active TSS	Monocytes-CD14+_RO01746	blood
9	chr12:10323200-10324400	Active TSS	Brain Hippocampus Middle	brain
10	chr12:10323200-10324400	Weak transcription	A549	lung
11	chr12:10323400-10325200	Active TSS	Placenta	Placenta
12	chr12:10323400-10325400	Flanking Active TSS	Hela-S3	cervix
13	chr12:10323400-10327400	Weak transcription	HMEC	breast
14	chr12:10323400-10327400	Weak transcription	NHEK	skin
15	chr12:10323600-10324200	Active TSS	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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