Variant report

Variant	rs10845055
Chromosome Location	chr12:10305764-10305765
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:10305467..10306793-chr12:10342493..10344173,14	MCF-7	breast:
2	chr12:10305112..10307480-chr12:10310212..10312398,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10845054	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12581931	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2634159	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2634160	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2634162	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2742115	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3741860	0.95[EUR][1000 genomes]
rs4103869	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71457827	0.83[AMR][1000 genomes]
rs9300224	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10303200-10305800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr12:10304800-10306000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr12:10305200-10306000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr12:10305600-10305800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
5	chr12:10305600-10305800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr12:10305600-10305800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr12:10305600-10305800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr12:10305600-10305800	Enhancers	Adipose Nuclei	Adipose
9	chr12:10305600-10305800	Enhancers	Brain Germinal Matrix	brain
10	chr12:10305600-10305800	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr12:10305600-10305800	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr12:10305600-10305800	Active TSS	Fetal Lung	lung
13	chr12:10305600-10305800	Enhancers	Fetal Muscle Leg	muscle
14	chr12:10305600-10305800	Enhancers	Fetal Stomach	stomach
15	chr12:10305600-10305800	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr12:10305600-10305800	Enhancers	Stomach Smooth Muscle	stomach
17	chr12:10305600-10305800	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr12:10305600-10306000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr12:10305600-10306000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr12:10305600-10306000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr12:10305600-10306000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr12:10305600-10306000	Enhancers	Primary B cells from cord blood	blood
23	chr12:10305600-10306000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
24	chr12:10305600-10306000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr12:10305600-10306000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr12:10305600-10306000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr12:10305600-10306000	Flanking Active TSS	Liver	Liver
28	chr12:10305600-10306000	Enhancers	Brain Anterior Caudate	brain
29	chr12:10305600-10306000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr12:10305600-10306000	Enhancers	Fetal Intestine Large	intestine
31	chr12:10305600-10306000	Enhancers	Fetal Intestine Small	intestine
32	chr12:10305600-10306000	Enhancers	Fetal Thymus	thymus
33	chr12:10305600-10306000	Enhancers	Spleen	Spleen
34	chr12:10305600-10306000	Bivalent Enhancer	Dnd41	blood
35	chr12:10305600-10306000	Enhancers	NHLF	lung
36	chr12:10305600-10306000	Enhancers	Osteobl	bone
37	chr12:10305600-10306600	Active TSS	Fetal Brain Male	brain
38	chr12:10305600-10307000	Active TSS	Brain Angular Gyrus	brain
39	chr12:10305600-10307000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle

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