Variant report

Variant	rs2010655
Chromosome Location	chr12:10318348-10318349
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11053653	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2634159	0.82[ASN][1000 genomes]
rs2634160	0.97[ASN][1000 genomes]
rs2634162	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs2742107	0.96[ASN][1000 genomes]
rs2742108	0.96[ASN][1000 genomes]
rs2742110	0.95[JPT][hapmap]
rs2742113	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs2742114	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs2742115	0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs3741860	0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs7305138	0.91[CHB][hapmap]
rs9300224	0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv898758	chr12:10309477-10318497	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10307000-10318600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr12:10307000-10319800	Weak transcription	Right Atrium	heart
3	chr12:10313800-10321800	Weak transcription	NHEK	skin
4	chr12:10315000-10319600	Weak transcription	Primary B cells from cord blood	blood
5	chr12:10316200-10318400	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr12:10316200-10318600	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr12:10316200-10319200	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr12:10317600-10320800	Enhancers	Placenta	Placenta
9	chr12:10318000-10318400	Enhancers	NHLF	lung
10	chr12:10318000-10318600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr12:10318000-10318600	Enhancers	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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