Variant report
| Variant | rs7961767 |
|---|---|
| Chromosome Location | chr12:124328389-124328390 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs11833130 | 0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11834289 | 0.94[ASN][1000 genomes] |
| rs12579670 | 0.94[ASN][1000 genomes] |
| rs12580536 | 0.94[ASN][1000 genomes] |
| rs12580578 | 0.92[ASN][1000 genomes] |
| rs12580590 | 0.94[ASN][1000 genomes] |
| rs12581508 | 0.94[ASN][1000 genomes] |
| rs12581919 | 0.94[ASN][1000 genomes] |
| rs1922255 | 1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1922256 | 1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs57190253 | 0.92[ASN][1000 genomes] |
| rs58643005 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59689760 | 0.97[ASN][1000 genomes] |
| rs60383738 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60712952 | 0.92[ASN][1000 genomes] |
| rs61732737 | 0.94[ASN][1000 genomes] |
| rs7315108 | 0.94[ASN][1000 genomes] |
| rs7315579 | 0.94[ASN][1000 genomes] |
| rs73422750 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73422756 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7969440 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7969937 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7977449 | 0.94[ASN][1000 genomes] |
| rs7979227 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv498024 | chr12:123994372-124459856 | Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 63 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:124326000-124341600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
