Variant report

Variant	rs7315579
Chromosome Location	chr12:124338433-124338434
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11057384	0.86[EUR][1000 genomes]
rs11831541	0.82[EUR][1000 genomes]
rs11833130	0.94[ASN][1000 genomes]
rs11834289	1.00[ASN][1000 genomes]
rs12579670	1.00[ASN][1000 genomes]
rs12580536	1.00[ASN][1000 genomes]
rs12580578	0.97[ASN][1000 genomes]
rs12580590	1.00[ASN][1000 genomes]
rs12581508	1.00[ASN][1000 genomes]
rs12581919	1.00[ASN][1000 genomes]
rs1922255	0.89[ASN][1000 genomes]
rs1922256	0.92[ASN][1000 genomes]
rs57190253	0.97[ASN][1000 genomes]
rs58643005	0.94[ASN][1000 genomes]
rs59689760	0.92[ASN][1000 genomes]
rs60383738	0.94[ASN][1000 genomes]
rs60712952	0.97[ASN][1000 genomes]
rs61732737	1.00[ASN][1000 genomes]
rs6488908	0.82[EUR][1000 genomes]
rs7134843	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7300414	0.90[EUR][1000 genomes]
rs7301708	0.90[EUR][1000 genomes]
rs7305239	0.82[EUR][1000 genomes]
rs7314612	0.90[EUR][1000 genomes]
rs7315108	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73219083	0.80[EUR][1000 genomes]
rs73422750	0.94[ASN][1000 genomes]
rs73422756	0.94[ASN][1000 genomes]
rs73424821	0.82[EUR][1000 genomes]
rs7961767	0.94[ASN][1000 genomes]
rs7967147	0.80[EUR][1000 genomes]
rs7969440	0.94[ASN][1000 genomes]
rs7969937	0.94[ASN][1000 genomes]
rs7977449	1.00[ASN][1000 genomes]
rs7979227	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498024	chr12:123994372-124459856	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124326000-124341600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:124331400-124352800	Weak transcription	Fetal Brain Female	brain
3	chr12:124334200-124344200	Weak transcription	Brain Germinal Matrix	brain
4	chr12:124337800-124338600	Enhancers	Fetal Intestine Large	intestine
5	chr12:124337800-124338600	Enhancers	Fetal Intestine Small	intestine
6	chr12:124337800-124338600	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr12:124338000-124338600	Enhancers	Duodenum Mucosa	Duodenum
8	chr12:124338000-124338600	Enhancers	Fetal Brain Male	brain
9	chr12:124338200-124338600	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr12:124338400-124338600	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr12:124338400-124339200	Enhancers	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links