Variant report

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10785336	0.88[EUR][1000 genomes]
rs10880263	0.81[CEU][hapmap]
rs10880274	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs10880276	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs11181383	0.87[EUR][1000 genomes]
rs11181384	0.90[CEU][hapmap];0.87[EUR][1000 genomes]
rs11181385	0.88[EUR][1000 genomes]
rs11181387	0.89[EUR][1000 genomes]
rs11181388	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs11181391	0.89[EUR][1000 genomes]
rs11181396	0.91[EUR][1000 genomes]
rs11829883	0.88[EUR][1000 genomes]
rs11832197	0.81[EUR][1000 genomes]
rs11834173	0.89[EUR][1000 genomes]
rs12227365	0.88[EUR][1000 genomes]
rs12230675	0.89[EUR][1000 genomes]
rs12231113	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12231307	0.88[EUR][1000 genomes]
rs12582652	0.87[EUR][1000 genomes]
rs12658	0.85[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs17091074	0.90[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1988893	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs2100546	0.88[EUR][1000 genomes]
rs34725377	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4586237	0.87[EUR][1000 genomes]
rs61924344	0.92[EUR][1000 genomes]
rs61940227	0.81[EUR][1000 genomes]
rs7296847	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs7306744	0.92[EUR][1000 genomes]
rs73116436	0.90[EUR][1000 genomes]
rs7485381	0.90[EUR][1000 genomes]
rs7953509	0.88[EUR][1000 genomes]
rs7960726	0.89[EUR][1000 genomes]
rs880161	0.87[EUR][1000 genomes]
rs9325211	0.95[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430505	chr12:42297931-42720773	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1048971	chr12:42651976-42801204	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1044790	chr12:42672255-43344184	Enhancers Bivalent Enhancer Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
4	nsv541483	chr12:42672255-43344184	Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7963469	PRICKLE1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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