Variant report

Variant	rs7964635
Chromosome Location	chr12:45601184-45601185
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10437984	0.83[ASN][1000 genomes]
rs10785557	0.83[ASN][1000 genomes]
rs10880760	0.81[ASN][1000 genomes]
rs10880761	0.83[ASN][1000 genomes]
rs10880762	0.82[ASN][1000 genomes]
rs10880763	0.82[ASN][1000 genomes]
rs10880764	0.82[ASN][1000 genomes]
rs11182905	0.88[ASN][1000 genomes]
rs11182908	0.82[ASN][1000 genomes]
rs11182918	0.83[ASN][1000 genomes]
rs11182936	0.82[ASN][1000 genomes]
rs11182938	0.82[ASN][1000 genomes]
rs11182939	0.82[ASN][1000 genomes]
rs11182944	0.81[ASN][1000 genomes]
rs11182946	0.81[ASN][1000 genomes]
rs11182949	0.80[ASN][1000 genomes]
rs12230322	0.86[ASN][1000 genomes]
rs12231753	0.88[ASN][1000 genomes]
rs2052602	0.81[ASN][1000 genomes]
rs2052603	0.82[ASN][1000 genomes]
rs2408184	0.83[ASN][1000 genomes]
rs35660715	0.83[ASN][1000 genomes]
rs3759080	0.83[ASN][1000 genomes]
rs58444879	0.82[ASN][1000 genomes]
rs7138983	0.82[ASN][1000 genomes]
rs7956033	0.84[ASN][1000 genomes]
rs9739519	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050923	chr12:45581310-45808289	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv3342692	chr12:45599510-45602058	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
3	esv3414622	chr12:45599685-45601883	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
4	esv3321772	chr12:45600085-45601633	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45586600-45602400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:45595200-45608600	Weak transcription	Fetal Thymus	thymus
3	chr12:45595200-45608600	Weak transcription	Small Intestine	intestine
4	chr12:45595400-45608600	Weak transcription	Fetal Intestine Large	intestine
5	chr12:45599400-45601400	Weak transcription	HepG2	liver
6	chr12:45600000-45608600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr12:45600200-45607800	Weak transcription	Primary B cells from cord blood	blood
8	chr12:45600200-45607800	Weak transcription	GM12878-XiMat	blood
9	chr12:45600200-45608000	Weak transcription	Primary T cells from cord blood	blood
10	chr12:45600200-45608000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr12:45600200-45608600	Weak transcription	Thymus	Thymus
12	chr12:45600400-45601400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr12:45600400-45601400	Weak transcription	Spleen	Spleen
14	chr12:45600400-45603000	Weak transcription	Primary B cells from peripheral blood	blood
15	chr12:45600400-45603000	Weak transcription	Liver	Liver
16	chr12:45600400-45608000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr12:45600400-45608200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr12:45600400-45608200	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr12:45600400-45608400	Weak transcription	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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