Variant report

Variant	rs7966215
Chromosome Location	chr12:105577823-105577824
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7965580	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832506	chr12:105461274-105637561	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv870352	chr12:105557770-105589263	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105522600-105586000	Weak transcription	Stomach Mucosa	stomach
2	chr12:105524600-105578200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr12:105525400-105583200	Weak transcription	Fetal Heart	heart
4	chr12:105546800-105625200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr12:105556200-105583400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr12:105557600-105578000	Weak transcription	Gastric	stomach
7	chr12:105558200-105578200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr12:105558200-105578400	Weak transcription	Right Ventricle	heart
9	chr12:105558200-105587200	Weak transcription	Psoas Muscle	Psoas
10	chr12:105558400-105578000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr12:105558800-105615200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr12:105559400-105578800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr12:105560800-105581800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr12:105561400-105598400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr12:105564000-105582200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr12:105568000-105589400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr12:105568200-105578200	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr12:105568200-105578400	Weak transcription	Esophagus	oesophagus
19	chr12:105568200-105581800	Weak transcription	Small Intestine	intestine
20	chr12:105568400-105578000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr12:105568400-105578200	Weak transcription	Pancreas	Pancrea
22	chr12:105568400-105581000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr12:105568600-105578800	Weak transcription	HepG2	liver
24	chr12:105569000-105578200	Weak transcription	Aorta	Aorta
25	chr12:105569600-105578000	Weak transcription	Fetal Muscle Trunk	muscle
26	chr12:105569600-105578000	Weak transcription	Ovary	ovary
27	chr12:105569600-105578200	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr12:105569600-105578400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr12:105569600-105578400	Weak transcription	Spleen	Spleen
30	chr12:105569600-105581000	Weak transcription	Hela-S3	cervix
31	chr12:105569800-105578200	Weak transcription	Dnd41	blood
32	chr12:105570000-105578000	Weak transcription	Lung	lung
33	chr12:105570000-105579000	Weak transcription	NHEK	skin
34	chr12:105570200-105579000	Weak transcription	Brain Angular Gyrus	brain
35	chr12:105570400-105578000	Weak transcription	Brain Cingulate Gyrus	brain
36	chr12:105570400-105578400	Weak transcription	Colonic Mucosa	Colon
37	chr12:105570600-105578000	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr12:105570800-105578000	Weak transcription	Rectal Smooth Muscle	rectum
39	chr12:105570800-105579200	Weak transcription	HSMMtube	muscle
40	chr12:105571000-105578000	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr12:105571000-105578200	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr12:105571000-105578200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr12:105571000-105581800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr12:105571200-105578200	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr12:105571200-105579000	Weak transcription	Stomach Smooth Muscle	stomach
46	chr12:105571400-105578000	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr12:105571400-105578000	Weak transcription	Liver	Liver
48	chr12:105571400-105578000	Weak transcription	Brain Hippocampus Middle	brain
49	chr12:105571400-105578000	Weak transcription	Osteobl	bone
50	chr12:105571400-105578400	Weak transcription	HMEC	breast

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