Variant report

Variant	rs7967668
Chromosome Location	chr12:104263426-104263427
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10745982	0.86[AMR][1000 genomes]
rs10745983	0.84[AMR][1000 genomes]
rs10778291	0.83[AMR][1000 genomes]
rs10778293	0.86[AMR][1000 genomes]
rs10778294	0.86[AMR][1000 genomes]
rs10778295	0.83[AMR][1000 genomes]
rs10861128	0.86[AMR][1000 genomes]
rs10861129	0.85[AMR][1000 genomes]
rs1165596	0.84[AMR][1000 genomes]
rs1165597	0.84[AMR][1000 genomes]
rs1165598	0.83[AMR][1000 genomes]
rs1185985	0.83[AMR][1000 genomes]
rs12312978	0.86[AMR][1000 genomes]
rs1583599	0.86[AMR][1000 genomes]
rs1595338	0.86[AMR][1000 genomes]
rs1595339	0.86[AMR][1000 genomes]
rs2196614	0.86[AMR][1000 genomes]
rs2248382	0.86[AMR][1000 genomes]
rs2374353	0.86[AMR][1000 genomes]
rs2439622	0.86[AMR][1000 genomes]
rs2576950	0.86[AMR][1000 genomes]
rs2576957	0.86[AMR][1000 genomes]
rs2576958	0.86[AMR][1000 genomes]
rs2576960	0.86[AMR][1000 genomes]
rs2576961	0.86[AMR][1000 genomes]
rs2576962	0.86[AMR][1000 genomes]
rs2576963	0.86[AMR][1000 genomes]
rs2576964	0.86[AMR][1000 genomes]
rs2576965	0.85[AMR][1000 genomes]
rs2576967	0.86[AMR][1000 genomes]
rs2583240	0.86[AMR][1000 genomes]
rs2583241	0.86[AMR][1000 genomes]
rs2583242	0.86[AMR][1000 genomes]
rs2583243	0.86[AMR][1000 genomes]
rs2583245	0.86[AMR][1000 genomes]
rs2583246	0.86[AMR][1000 genomes]
rs2583247	0.86[AMR][1000 genomes]
rs2583248	0.86[AMR][1000 genomes]
rs2583249	0.85[AMR][1000 genomes]
rs2583250	0.86[AMR][1000 genomes]
rs4316574	0.86[AMR][1000 genomes]
rs4488278	0.86[AMR][1000 genomes]
rs4556622	0.86[AMR][1000 genomes]
rs728165	0.86[AMR][1000 genomes]
rs7967501	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34031	chr12:104114277-104298546	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	nsv560039	chr12:104177668-104455340	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104250000-104263800	Weak transcription	Liver	Liver
2	chr12:104254800-104278200	Weak transcription	Aorta	Aorta
3	chr12:104259200-104263800	Weak transcription	HepG2	liver
4	chr12:104262200-104264000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr12:104262600-104264000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr12:104262800-104263800	Weak transcription	Colon Smooth Muscle	Colon
7	chr12:104262800-104264200	Weak transcription	Rectal Smooth Muscle	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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