Variant report

Variant	rs10745983
Chromosome Location	chr12:104264425-104264426
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:104263974..104266600-chr12:104512244..104514894,2	MCF-7	breast:
2	chr12:104164872..104166111-chr12:104264007..104265181,16	MCF-7	breast:
3	chr12:104162497..104163055-chr12:104264032..104264603,2	MCF-7	breast:
4	chr12:104233938..104236933-chr12:104262361..104264574,3	MCF-7	breast:
5	chr12:104164880..104166150-chr12:104263725..104264827,7	MCF-7	breast:
6	chr12:104262529..104265193-chr12:104278298..104280290,2	K562	blood:

Variant related genes	Relation type
ENSG00000257327	Chromatin interaction
ENSG00000111696	Chromatin interaction
ENSG00000257681	Chromatin interaction

Extended variants
information (count: 158 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:156)

rs_ID	r²[population]
rs10745982	0.85[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10745986	0.93[ASN][1000 genomes]
rs10745987	0.93[ASN][1000 genomes]
rs10745988	0.93[ASN][1000 genomes]
rs10745989	0.91[ASN][1000 genomes]
rs10745990	0.94[ASN][1000 genomes]
rs10778291	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10778293	1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10778294	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10778295	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10778297	0.93[ASN][1000 genomes]
rs10778298	0.93[ASN][1000 genomes]
rs10778299	0.93[ASN][1000 genomes]
rs10778300	0.97[ASN][1000 genomes]
rs10778301	0.96[ASN][1000 genomes]
rs10778302	0.92[ASN][1000 genomes]
rs10778303	0.93[ASN][1000 genomes]
rs10778304	0.93[ASN][1000 genomes]
rs10861126	0.94[ASN][1000 genomes]
rs10861128	1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10861129	1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10861134	0.93[ASN][1000 genomes]
rs10861135	0.93[ASN][1000 genomes]
rs10861136	0.82[ASN][1000 genomes]
rs10861137	0.93[ASN][1000 genomes]
rs10861138	0.82[ASN][1000 genomes]
rs10861139	0.93[ASN][1000 genomes]
rs10861140	0.93[ASN][1000 genomes]
rs11111816	0.83[EUR][1000 genomes]
rs11111817	0.83[EUR][1000 genomes]
rs11111820	1.00[YRI][hapmap]
rs11111822	0.95[ASN][1000 genomes]
rs11111823	0.93[ASN][1000 genomes]
rs11111824	0.93[ASN][1000 genomes]
rs11111827	0.90[ASN][1000 genomes]
rs11613427	0.93[ASN][1000 genomes]
rs1165596	0.85[YRI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1165597	0.85[YRI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1165598	0.85[YRI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11830285	1.00[YRI][hapmap]
rs1185985	0.85[YRI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12312978	1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1583599	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1595338	0.85[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1595339	0.85[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2033730	0.92[ASN][1000 genomes]
rs2118313	0.83[ASN][1000 genomes]
rs2196614	0.85[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2248382	0.85[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2251979	0.83[EUR][1000 genomes]
rs2252000	0.83[EUR][1000 genomes]
rs2252088	0.83[EUR][1000 genomes]
rs2263954	0.84[EUR][1000 genomes]
rs2374350	0.97[ASN][1000 genomes]
rs2374351	0.97[ASN][1000 genomes]
rs2374352	0.99[ASN][1000 genomes]
rs2374353	1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2438116	0.83[EUR][1000 genomes]
rs2438389	0.83[EUR][1000 genomes]
rs2439622	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2576950	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2576957	0.85[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2576958	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2576960	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2576961	0.85[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2576962	0.85[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2576963	0.85[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2576964	0.82[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2576965	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2576967	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2576970	0.85[YRI][hapmap]
rs2583236	0.94[ASN][1000 genomes]
rs2583240	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2583241	0.85[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2583242	0.85[YRI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2583243	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2583245	0.85[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2583246	0.85[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2583247	0.85[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2583248	1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2583249	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2583250	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2888809	0.97[ASN][1000 genomes]
rs2888810	0.97[ASN][1000 genomes]
rs34978042	0.81[ASN][1000 genomes]
rs3850016	0.93[ASN][1000 genomes]
rs3850017	0.93[ASN][1000 genomes]
rs3850018	0.93[ASN][1000 genomes]
rs3850019	0.93[ASN][1000 genomes]
rs3850020	0.89[ASN][1000 genomes]
rs4316574	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4488278	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4491322	0.93[ASN][1000 genomes]
rs4511355	0.93[ASN][1000 genomes]
rs4556622	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4590949	1.00[YRI][hapmap]
rs4964118	0.93[ASN][1000 genomes]
rs4964308	0.93[ASN][1000 genomes]
rs4964322	0.93[ASN][1000 genomes]
rs4964323	0.93[ASN][1000 genomes]
rs4964326	0.92[ASN][1000 genomes]
rs4964327	0.93[ASN][1000 genomes]
rs4964328	0.93[ASN][1000 genomes]
rs4964329	0.93[ASN][1000 genomes]
rs4964330	0.93[ASN][1000 genomes]
rs56205268	0.82[ASN][1000 genomes]
rs6539109	0.93[ASN][1000 genomes]
rs6539110	0.93[ASN][1000 genomes]
rs7136272	0.97[ASN][1000 genomes]
rs7136297	0.97[ASN][1000 genomes]
rs7138145	0.93[ASN][1000 genomes]
rs7138345	0.93[ASN][1000 genomes]
rs7138361	0.93[ASN][1000 genomes]
rs728165	0.85[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs728166	0.81[ASN][1000 genomes]
rs7294443	0.97[ASN][1000 genomes]
rs7295172	0.97[ASN][1000 genomes]
rs7295268	0.97[ASN][1000 genomes]
rs7295285	0.97[ASN][1000 genomes]
rs7295499	0.95[ASN][1000 genomes]
rs7298496	0.93[ASN][1000 genomes]
rs7298653	0.93[ASN][1000 genomes]
rs7298655	0.97[ASN][1000 genomes]
rs7299349	0.93[ASN][1000 genomes]
rs7301439	0.97[ASN][1000 genomes]
rs7310988	0.97[ASN][1000 genomes]
rs7311473	0.97[ASN][1000 genomes]
rs7312936	0.95[ASN][1000 genomes]
rs7314790	0.97[ASN][1000 genomes]
rs7315947	0.82[YRI][hapmap]
rs73175882	0.82[ASN][1000 genomes]
rs7488952	0.99[ASN][1000 genomes]
rs7956005	0.93[ASN][1000 genomes]
rs7956297	0.93[ASN][1000 genomes]
rs7957862	0.93[ASN][1000 genomes]
rs7963412	0.93[ASN][1000 genomes]
rs7964542	0.97[ASN][1000 genomes]
rs7964654	0.97[ASN][1000 genomes]
rs7967501	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7967668	0.84[AMR][1000 genomes]
rs7967862	0.81[ASN][1000 genomes]
rs7970923	0.91[ASN][1000 genomes]
rs7971070	0.88[ASN][1000 genomes]
rs7971105	0.93[ASN][1000 genomes]
rs7979423	0.94[ASN][1000 genomes]
rs7979748	0.81[ASN][1000 genomes]
rs7979749	0.86[ASN][1000 genomes]
rs878125	0.92[ASN][1000 genomes]
rs878126	0.92[ASN][1000 genomes]
rs9888379	0.97[ASN][1000 genomes]
rs9943750	0.81[ASN][1000 genomes]
rs9943761	0.93[ASN][1000 genomes]
rs9943762	0.93[ASN][1000 genomes]
rs9943812	0.93[ASN][1000 genomes]
rs9943844	0.93[ASN][1000 genomes]
rs9988931	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34031	chr12:104114277-104298546	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	nsv560039	chr12:104177668-104455340	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104254800-104278200	Weak transcription	Aorta	Aorta
2	chr12:104263800-104264600	Enhancers	Liver	Liver
3	chr12:104263800-104265200	Enhancers	Colon Smooth Muscle	Colon
4	chr12:104263800-104265400	Enhancers	HepG2	liver
5	chr12:104264200-104265000	Enhancers	Rectal Smooth Muscle	rectum

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