Variant report

Variant	rs7967862
Chromosome Location	chr12:104263452-104263453
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:104233414..104235645-chr12:104261719..104263696,2	MCF-7	breast:
2	chr12:104233938..104236933-chr12:104262361..104264574,3	MCF-7	breast:
3	chr12:104262529..104265193-chr12:104278298..104280290,2	K562	blood:

Variant related genes	Relation type
ENSG00000111696	Chromatin interaction
ENSG00000257327	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10745982	0.83[ASN][1000 genomes]
rs10745983	0.81[ASN][1000 genomes]
rs10778294	0.81[ASN][1000 genomes]
rs10778300	0.81[ASN][1000 genomes]
rs10778301	0.81[ASN][1000 genomes]
rs10861124	0.82[EUR][1000 genomes]
rs10861126	0.81[ASN][1000 genomes]
rs10861129	0.81[ASN][1000 genomes]
rs10861138	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10861141	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11111822	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11111828	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11111832	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1165598	0.83[ASN][1000 genomes]
rs12368121	0.82[EUR][1000 genomes]
rs12368164	0.82[EUR][1000 genomes]
rs1583599	0.81[ASN][1000 genomes]
rs1595338	0.81[ASN][1000 genomes]
rs2118313	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2196614	0.81[ASN][1000 genomes]
rs2248382	0.80[ASN][1000 genomes]
rs2374350	0.81[ASN][1000 genomes]
rs2374351	0.81[ASN][1000 genomes]
rs2374352	0.83[ASN][1000 genomes]
rs2374353	0.81[ASN][1000 genomes]
rs2576950	0.81[ASN][1000 genomes]
rs2576963	0.80[ASN][1000 genomes]
rs2576964	0.80[ASN][1000 genomes]
rs2576965	0.80[ASN][1000 genomes]
rs2583240	0.80[ASN][1000 genomes]
rs2583241	0.80[ASN][1000 genomes]
rs2583242	0.80[ASN][1000 genomes]
rs2583248	0.81[ASN][1000 genomes]
rs2888809	0.81[ASN][1000 genomes]
rs2888810	0.81[ASN][1000 genomes]
rs3887987	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4316574	0.81[ASN][1000 genomes]
rs4488278	0.81[ASN][1000 genomes]
rs4556622	0.81[ASN][1000 genomes]
rs56205268	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7136272	0.81[ASN][1000 genomes]
rs7136297	0.81[ASN][1000 genomes]
rs728166	0.93[ASN][1000 genomes]
rs7294443	0.81[ASN][1000 genomes]
rs7295172	0.81[ASN][1000 genomes]
rs7295268	0.81[ASN][1000 genomes]
rs7295285	0.81[ASN][1000 genomes]
rs7298655	0.81[ASN][1000 genomes]
rs7301439	0.81[ASN][1000 genomes]
rs7310988	0.81[ASN][1000 genomes]
rs7311473	0.81[ASN][1000 genomes]
rs7312936	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7314790	0.81[ASN][1000 genomes]
rs7315838	0.80[EUR][1000 genomes]
rs73175882	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7488952	0.83[ASN][1000 genomes]
rs7964542	0.81[ASN][1000 genomes]
rs7964654	0.81[ASN][1000 genomes]
rs9888379	0.81[ASN][1000 genomes]
rs9988931	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34031	chr12:104114277-104298546	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	nsv560039	chr12:104177668-104455340	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104250000-104263800	Weak transcription	Liver	Liver
2	chr12:104254800-104278200	Weak transcription	Aorta	Aorta
3	chr12:104259200-104263800	Weak transcription	HepG2	liver
4	chr12:104262200-104264000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr12:104262600-104264000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr12:104262800-104263800	Weak transcription	Colon Smooth Muscle	Colon
7	chr12:104262800-104264200	Weak transcription	Rectal Smooth Muscle	rectum

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