Variant report

Variant	rs7968699
Chromosome Location	chr12:124052243-124052244
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs11572911	1.00[EUR][1000 genomes]
rs11572928	0.92[EUR][1000 genomes]
rs11572929	0.92[EUR][1000 genomes]
rs11572931	0.92[EUR][1000 genomes]
rs11572938	0.92[EUR][1000 genomes]
rs11572956	0.92[EUR][1000 genomes]
rs11572962	0.92[EUR][1000 genomes]
rs11572992	0.92[EUR][1000 genomes]
rs11573002	0.92[EUR][1000 genomes]
rs11573005	0.92[EUR][1000 genomes]
rs11573006	0.92[EUR][1000 genomes]
rs11829661	0.85[AFR][1000 genomes]
rs11831129	1.00[EUR][1000 genomes]
rs12099985	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1568031	0.92[EUR][1000 genomes]
rs17881657	0.92[EUR][1000 genomes]
rs1913847	0.92[EUR][1000 genomes]
rs28627432	0.92[EUR][1000 genomes]
rs28743126	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35917561	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3850953	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4534668	0.92[EUR][1000 genomes]
rs56816130	0.92[EUR][1000 genomes]
rs58680194	0.92[EUR][1000 genomes]
rs59279556	0.92[EUR][1000 genomes]
rs60422010	0.92[EUR][1000 genomes]
rs60577371	0.92[EUR][1000 genomes]
rs61082817	0.92[EUR][1000 genomes]
rs6488881	0.84[AFR][1000 genomes]
rs6488882	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6488885	1.00[EUR][1000 genomes]
rs6488886	1.00[EUR][1000 genomes]
rs6488889	1.00[EUR][1000 genomes]
rs7134190	1.00[EUR][1000 genomes]
rs7136101	0.81[AFR][1000 genomes]
rs7301031	1.00[EUR][1000 genomes]
rs7306906	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73416265	0.92[EUR][1000 genomes]
rs73416269	0.92[EUR][1000 genomes]
rs73416277	0.92[EUR][1000 genomes]
rs73416283	1.00[EUR][1000 genomes]
rs73416298	0.92[EUR][1000 genomes]
rs73416299	0.92[EUR][1000 genomes]
rs73416301	0.92[EUR][1000 genomes]
rs73418103	0.92[EUR][1000 genomes]
rs73418104	0.92[EUR][1000 genomes]
rs73418107	0.92[EUR][1000 genomes]
rs73418114	0.92[EUR][1000 genomes]
rs73418125	0.92[EUR][1000 genomes]
rs73418139	0.92[EUR][1000 genomes]
rs73418153	0.92[EUR][1000 genomes]
rs73418167	0.92[EUR][1000 genomes]
rs73418179	0.92[EUR][1000 genomes]
rs7964934	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7965292	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7973187	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7973689	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7974138	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038841	chr12:123757305-124087671	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv541622	chr12:123757305-124087671	Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv1050598	chr12:123991646-124214332	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	nsv541623	chr12:123991646-124214332	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	nsv498024	chr12:123994372-124459856	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
6	esv2422416	chr12:124009676-124085689	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
7	nsv1042181	chr12:124037400-124152950	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124051800-124053000	Weak transcription	HepG2	liver

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