Variant report

Variant	rs35917561
Chromosome Location	chr12:124041472-124041473
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:124041024..124043349-chr12:124054707..124057427,2	MCF-7	breast:

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs1060638	1.00[ASN][1000 genomes]
rs11572911	0.92[EUR][1000 genomes]
rs11572914	1.00[ASN][1000 genomes]
rs11572916	1.00[ASN][1000 genomes]
rs11572919	1.00[ASN][1000 genomes]
rs11572921	1.00[ASN][1000 genomes]
rs11572928	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11572929	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11572931	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11572938	1.00[EUR][1000 genomes]
rs11572956	1.00[EUR][1000 genomes]
rs11572961	1.00[ASN][1000 genomes]
rs11572962	1.00[EUR][1000 genomes]
rs11572965	1.00[ASN][1000 genomes]
rs11572970	1.00[ASN][1000 genomes]
rs11572992	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11573002	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11573003	1.00[ASN][1000 genomes]
rs11573005	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11573006	1.00[EUR][1000 genomes]
rs11831129	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12099985	0.92[EUR][1000 genomes]
rs1568031	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17881657	1.00[EUR][1000 genomes]
rs1913847	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28627432	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28668364	1.00[ASN][1000 genomes]
rs28711796	0.84[EUR][1000 genomes]
rs28743126	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3850953	0.92[EUR][1000 genomes]
rs4534668	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4930715	1.00[ASN][1000 genomes]
rs56816130	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57071951	1.00[ASN][1000 genomes]
rs58028686	1.00[ASN][1000 genomes]
rs58507743	1.00[ASN][1000 genomes]
rs58680194	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58831452	1.00[ASN][1000 genomes]
rs58904890	1.00[ASN][1000 genomes]
rs59279556	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59827616	1.00[ASN][1000 genomes]
rs60422010	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60577371	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61082817	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6488882	0.92[EUR][1000 genomes]
rs6488885	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6488886	0.92[EUR][1000 genomes]
rs6488889	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7134190	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7301031	0.92[EUR][1000 genomes]
rs7306906	0.92[EUR][1000 genomes]
rs7316613	1.00[ASN][1000 genomes]
rs73414295	1.00[ASN][1000 genomes]
rs73416203	1.00[ASN][1000 genomes]
rs73416204	1.00[ASN][1000 genomes]
rs73416211	1.00[ASN][1000 genomes]
rs73416216	1.00[ASN][1000 genomes]
rs73416265	1.00[EUR][1000 genomes]
rs73416269	1.00[EUR][1000 genomes]
rs73416277	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73416283	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73416288	1.00[ASN][1000 genomes]
rs73416298	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73416299	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73416301	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73418103	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73418104	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73418107	1.00[EUR][1000 genomes]
rs73418114	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73418125	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73418139	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73418148	1.00[ASN][1000 genomes]
rs73418153	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73418159	1.00[ASN][1000 genomes]
rs73418167	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73418174	1.00[ASN][1000 genomes]
rs73418179	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73418191	1.00[ASN][1000 genomes]
rs73420303	1.00[ASN][1000 genomes]
rs73420351	1.00[ASN][1000 genomes]
rs73420355	1.00[ASN][1000 genomes]
rs7964934	0.92[EUR][1000 genomes]
rs7965292	0.92[EUR][1000 genomes]
rs7965466	1.00[ASN][1000 genomes]
rs7968699	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7973187	0.92[EUR][1000 genomes]
rs7973689	0.92[EUR][1000 genomes]
rs7974138	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038841	chr12:123757305-124087671	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv541622	chr12:123757305-124087671	Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv1050598	chr12:123991646-124214332	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	nsv541623	chr12:123991646-124214332	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	nsv498024	chr12:123994372-124459856	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
6	esv2422416	chr12:124009676-124085689	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
7	nsv1042181	chr12:124037400-124152950	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124040200-124041800	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr12:124040400-124043600	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr12:124040400-124043800	Weak transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links