Variant report

Variant	rs28668364
Chromosome Location	chr12:124026482-124026483
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:124018963..124020649-chr12:124025084..124027162,2	MCF-7	breast:
2	chr12:123942696..123944552-chr12:124025092..124028061,2	K562	blood:
3	chr12:124014613..124020427-chr12:124021757..124030921,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184209	Chromatin interaction
ENSG00000188026	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1060638	1.00[ASN][1000 genomes]
rs11572914	1.00[ASN][1000 genomes]
rs11572916	1.00[ASN][1000 genomes]
rs11572919	1.00[ASN][1000 genomes]
rs11572921	1.00[ASN][1000 genomes]
rs11572928	1.00[ASN][1000 genomes]
rs11572929	1.00[ASN][1000 genomes]
rs11572931	1.00[ASN][1000 genomes]
rs11572961	1.00[ASN][1000 genomes]
rs11572965	1.00[ASN][1000 genomes]
rs11572970	1.00[ASN][1000 genomes]
rs11572992	1.00[ASN][1000 genomes]
rs11573002	1.00[ASN][1000 genomes]
rs11573003	1.00[ASN][1000 genomes]
rs11573005	1.00[ASN][1000 genomes]
rs11831129	1.00[ASN][1000 genomes]
rs1568031	1.00[ASN][1000 genomes]
rs1913847	1.00[ASN][1000 genomes]
rs28627432	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28743126	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35917561	1.00[ASN][1000 genomes]
rs4534668	0.81[AMR][1000 genomes]
rs4930715	1.00[ASN][1000 genomes]
rs56816130	1.00[ASN][1000 genomes]
rs57071951	1.00[ASN][1000 genomes]
rs58507743	1.00[ASN][1000 genomes]
rs58680194	1.00[ASN][1000 genomes]
rs58831452	1.00[ASN][1000 genomes]
rs58904890	1.00[ASN][1000 genomes]
rs59279556	1.00[ASN][1000 genomes]
rs59827616	1.00[ASN][1000 genomes]
rs60422010	1.00[ASN][1000 genomes]
rs60577371	1.00[ASN][1000 genomes]
rs61082817	1.00[ASN][1000 genomes]
rs6488885	1.00[ASN][1000 genomes]
rs6488889	1.00[ASN][1000 genomes]
rs7134190	1.00[ASN][1000 genomes]
rs7316613	1.00[ASN][1000 genomes]
rs73414295	1.00[ASN][1000 genomes]
rs73416203	1.00[ASN][1000 genomes]
rs73416204	1.00[ASN][1000 genomes]
rs73416211	1.00[ASN][1000 genomes]
rs73416216	1.00[ASN][1000 genomes]
rs73416277	1.00[ASN][1000 genomes]
rs73416283	1.00[ASN][1000 genomes]
rs73416288	1.00[ASN][1000 genomes]
rs73416298	1.00[ASN][1000 genomes]
rs73416299	1.00[ASN][1000 genomes]
rs73416301	1.00[ASN][1000 genomes]
rs73418103	1.00[ASN][1000 genomes]
rs73418104	1.00[ASN][1000 genomes]
rs73418114	1.00[ASN][1000 genomes]
rs73418125	1.00[ASN][1000 genomes]
rs73418139	1.00[ASN][1000 genomes]
rs73418148	1.00[ASN][1000 genomes]
rs73418153	1.00[ASN][1000 genomes]
rs73418159	1.00[ASN][1000 genomes]
rs73418167	1.00[ASN][1000 genomes]
rs73418174	1.00[ASN][1000 genomes]
rs73418179	1.00[ASN][1000 genomes]
rs73418191	1.00[ASN][1000 genomes]
rs73420303	1.00[ASN][1000 genomes]
rs7965466	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038841	chr12:123757305-124087671	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv541622	chr12:123757305-124087671	Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv1050598	chr12:123991646-124214332	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	nsv541623	chr12:123991646-124214332	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	nsv498024	chr12:123994372-124459856	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
6	esv2422416	chr12:124009676-124085689	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124019400-124028200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr12:124025600-124026800	Enhancers	K562	blood
3	chr12:124026000-124027000	Active TSS	HepG2	liver

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