Variant report
| Variant | rs7972616 |
|---|---|
| Chromosome Location | chr12:118361610-118361611 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:118359995..118361620-chr12:118405012..118407163,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000171435 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:7)
| rs_ID | r2[population] |
|---|---|
| rs10774966 | 0.82[ASN][1000 genomes] |
| rs10774967 | 0.82[ASN][1000 genomes] |
| rs10774968 | 0.82[ASN][1000 genomes] |
| rs10774971 | 0.82[ASN][1000 genomes] |
| rs10850936 | 0.82[ASN][1000 genomes] |
| rs11608329 | 0.91[AFR][1000 genomes] |
| rs4766886 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899545 | chr12:118316834-118367000 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
