Variant report

Variant	rs797804
Chromosome Location	chr7:83603024-83603025
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11975852	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13236626	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1623312	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1626663	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1627397	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1639559	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1639582	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1639583	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2535786	0.91[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2691695	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3801594	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4385417	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs701311	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs701312	0.92[EUR][1000 genomes]
rs701314	0.85[ASN][1000 genomes]
rs701320	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7786257	0.80[EUR][1000 genomes]
rs7799653	0.82[EUR][1000 genomes]
rs797802	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs797805	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs797816	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs797818	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs797820	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs797822	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs797823	0.87[ASN][1000 genomes]
rs797826	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs797828	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs797831	0.83[ASN][1000 genomes]
rs797833	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607707	chr7:83381032-83646816	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv888622	chr7:83526743-83631376	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1020784	chr7:83577402-83687108	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv888623	chr7:83596683-83687622	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv888624	chr7:83596683-83698177	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv275427	chr7:83597908-83606682	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83588200-83605200	Weak transcription	Colon Smooth Muscle	Colon
2	chr7:83588800-83624600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:83589000-83605000	Weak transcription	Hela-S3	cervix
4	chr7:83589000-83654600	Weak transcription	Fetal Stomach	stomach
5	chr7:83589200-83616600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:83589400-83605200	Weak transcription	Fetal Intestine Small	intestine
7	chr7:83591000-83624200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr7:83591000-83633800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:83591200-83607600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr7:83591200-83614400	Weak transcription	Fetal Muscle Trunk	muscle
11	chr7:83591200-83615800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr7:83591200-83634200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr7:83591200-83638400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr7:83591200-83654600	Weak transcription	Fetal Muscle Leg	muscle
15	chr7:83591800-83604600	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr7:83591800-83624600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr7:83592600-83626400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr7:83592800-83603400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr7:83596400-83610400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:83599800-83603600	Weak transcription	Fetal Lung	lung
21	chr7:83599800-83611000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr7:83600000-83613000	Weak transcription	Fetal Kidney	kidney
23	chr7:83602000-83603400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr7:83602000-83603400	Strong transcription	NHDF-Ad	bronchial
25	chr7:83602800-83606000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links