Variant report

Variant	rs797828
Chromosome Location	chr7:83582960-83582961
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:83580423..83584240-chr7:83586287..83589174,3	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11975852	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13236626	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1623312	0.91[EUR][1000 genomes]
rs1626663	0.91[EUR][1000 genomes]
rs1627397	0.91[EUR][1000 genomes]
rs1639559	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1639582	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1639583	0.91[EUR][1000 genomes]
rs2535786	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2691695	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3801594	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4385417	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs701311	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs701312	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs701314	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs701320	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs797802	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs797804	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs797805	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs797816	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs797818	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs797820	0.82[AMR][1000 genomes]
rs797822	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs797823	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs797826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs797831	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs797833	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607707	chr7:83381032-83646816	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv888620	chr7:83459908-83593805	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv888622	chr7:83526743-83631376	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1020784	chr7:83577402-83687108	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83579200-83590400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr7:83581800-83588000	Weak transcription	Colon Smooth Muscle	Colon

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