Variant report

Variant	rs7981014
Chromosome Location	chr12:62363197-62363198
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10784276	0.92[CHB][hapmap];0.84[CHD][hapmap]
rs10877774	0.91[CHB][hapmap]
rs11174244	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11174250	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11174258	0.97[ASN][1000 genomes]
rs11174259	0.98[ASN][1000 genomes]
rs12824077	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs2710790	0.94[CEU][hapmap]
rs349874	0.94[CEU][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs755660	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7964815	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap]
rs851904	0.94[CEU][hapmap];0.95[JPT][hapmap]
rs988971	0.93[ASN][1000 genomes]
rs990042	0.94[CEU][hapmap];0.91[JPT][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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