Variant report

Variant	rs7981957
Chromosome Location	chr13:110359849-110359850
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:110359448..110362939-chr13:110431472..110434391,4	K562	blood:
2	chr13:110358996..110361391-chr13:110378038..110380639,2	K562	blood:
3	chr13:110351496..110354241-chr13:110356886..110361111,4	K562	blood:
4	chr13:110357646..110363489-chr13:110367118..110372091,7	K562	blood:
5	chr13:110352177..110356373-chr13:110357272..110361111,4	K562	blood:
6	chr13:110350767..110352519-chr13:110358277..110361113,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000234854	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11842220	0.98[AFR][1000 genomes]
rs60576713	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7996512	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051686	chr13:110283468-110362954	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1044855	chr13:110301572-110408608	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110357000-110360600	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr13:110357200-110360600	Enhancers	Fetal Thymus	thymus
3	chr13:110357400-110360200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr13:110357800-110360200	Enhancers	Primary B cells from cord blood	blood
5	chr13:110358000-110361000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr13:110358000-110361000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr13:110358600-110360000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr13:110358600-110361000	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr13:110358600-110363200	Weak transcription	Liver	Liver
10	chr13:110358800-110360000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr13:110359000-110360200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr13:110359000-110367800	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr13:110359200-110360200	Enhancers	A549	lung
14	chr13:110359200-110361000	Flanking Active TSS	Dnd41	blood
15	chr13:110359400-110360000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr13:110359400-110360200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
17	chr13:110359400-110360600	Enhancers	Brain Germinal Matrix	brain
18	chr13:110359400-110360600	Flanking Active TSS	K562	blood
19	chr13:110359600-110360000	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr13:110359600-110360000	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr13:110359800-110360000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr13:110359800-110360000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
23	chr13:110359800-110360000	Enhancers	Colonic Mucosa	Colon
24	chr13:110359800-110360200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr13:110359800-110360200	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr13:110359800-110360800	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr13:110359800-110361000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr13:110359800-110368400	Weak transcription	Hela-S3	cervix

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