Variant report

Variant	rs7996512
Chromosome Location	chr13:110372466-110372467
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:110372207..110373827-chr13:110434766..110436789,2	K562	blood:
2	chr13:110355348..110357050-chr13:110370423..110373303,2	K562	blood:
3	chr13:110372327..110374107-chr13:110434766..110436742,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs57484686	0.86[ASN][1000 genomes]
rs58060899	0.82[AFR][1000 genomes]
rs58185501	0.82[AFR][1000 genomes]
rs60576713	0.90[EUR][1000 genomes]
rs7323401	0.81[AFR][1000 genomes]
rs7981957	1.00[CEU][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044855	chr13:110301572-110408608	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110368600-110377600	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr13:110369200-110376800	Weak transcription	Adipose Nuclei	Adipose
3	chr13:110370000-110372600	Enhancers	Liver	Liver
4	chr13:110370200-110374000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr13:110371200-110373000	Enhancers	A549	lung
6	chr13:110371400-110373600	Enhancers	Brain Substantia Nigra	brain
7	chr13:110371800-110373600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr13:110371800-110373600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr13:110372000-110372600	Enhancers	Fetal Lung	lung
10	chr13:110372000-110372800	Genic enhancers	Dnd41	blood
11	chr13:110372000-110373200	Enhancers	Primary hematopoietic stem cells	blood
12	chr13:110372000-110373400	Enhancers	K562	blood
13	chr13:110372000-110373600	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr13:110372000-110373600	Enhancers	Brain Anterior Caudate	brain
15	chr13:110372200-110372600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr13:110372200-110373000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr13:110372200-110373000	Weak transcription	Brain Angular Gyrus	brain
18	chr13:110372200-110373600	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr13:110372200-110374200	Enhancers	Brain Germinal Matrix	brain
20	chr13:110372200-110374200	Enhancers	HepG2	liver
21	chr13:110372400-110372600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr13:110372400-110372800	Enhancers	Pancreatic Islets	Pancreatic Islet
23	chr13:110372400-110373400	Enhancers	Brain Hippocampus Middle	brain
24	chr13:110372400-110373600	Enhancers	Stomach Mucosa	stomach

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