Variant report

Variant	rs58185501
Chromosome Location	chr13:110378305-110378306
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr13:110378158-110378504	K562	blood:	n/a	n/a
2	CEBPB	chr13:110378187-110378434	IMR90	lung:	n/a	n/a
3	USF1	chr13:110378227-110378791	HCT-116	colon:	n/a	chr13:110378520-110378531
4	CEBPB	chr13:110378164-110378455	HepG2	liver:	n/a	n/a
5	USF1	chr13:110378290-110378756	ECC-1	luminal epithelium:	n/a	chr13:110378520-110378531

No.	Distal block	Cell Line	Cell type
1	chr13:110376117..110378721-chr13:110379998..110382162,2	K562	blood:
2	chr13:110373412..110375608-chr13:110378035..110379687,2	K562	blood:
3	chr13:110374753..110377130-chr13:110377523..110379398,2	K562	blood:

Variant related genes	Relation type
LINC00676	TF binding region
ENSG00000234854	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs3887823	1.00[AMR][1000 genomes]
rs58060899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58781450	1.00[AMR][1000 genomes]
rs59527941	1.00[AMR][1000 genomes]
rs7323401	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7334432	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7334580	1.00[AMR][1000 genomes]
rs7996512	0.82[AFR][1000 genomes]
rs7996918	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044855	chr13:110301572-110408608	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110373000-110382000	Enhancers	Liver	Liver
2	chr13:110373200-110381200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr13:110373600-110381200	Weak transcription	Brain Angular Gyrus	brain
4	chr13:110373600-110381200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr13:110375000-110381600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr13:110376400-110381000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr13:110376400-110381000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr13:110376400-110381200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr13:110376800-110378400	Enhancers	Brain Germinal Matrix	brain
10	chr13:110377200-110378400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr13:110377200-110378400	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr13:110377200-110378600	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr13:110377200-110378600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr13:110377400-110382200	Transcr. at gene 5' and 3'	Dnd41	blood
15	chr13:110377600-110381200	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr13:110377600-110381200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr13:110378200-110380400	Weak transcription	Adipose Nuclei	Adipose
18	chr13:110378200-110380600	Weak transcription	Brain Anterior Caudate	brain
19	chr13:110378200-110381200	Weak transcription	Brain Hippocampus Middle	brain
20	chr13:110378200-110381200	Weak transcription	Brain Substantia Nigra	brain
21	chr13:110378200-110381600	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr13:110378200-110381800	Weak transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links