Variant report

Variant	rs58781450
Chromosome Location	chr13:110357407-110357408
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:110357158..110358883-chr13:110360873..110363213,2	MCF-7	breast:
2	chr13:110228879..110230744-chr13:110356982..110359196,2	MCF-7	breast:
3	chr13:110228371..110229219-chr13:110357237..110357853,2	MCF-7	breast:
4	chr13:110228371..110229219-chr13:110357176..110357853,3	MCF-7	breast:
5	chr13:110355569..110358710-chr13:110439541..110442319,3	MCF-7	breast:
6	chr13:110351496..110354241-chr13:110356886..110361111,4	K562	blood:
7	chr13:110356090..110357900-chr13:110437295..110440917,3	MCF-7	breast:
8	chr13:110352177..110356373-chr13:110357272..110361111,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000185950	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs3887823	1.00[AMR][1000 genomes]
rs58060899	1.00[AMR][1000 genomes]
rs58185501	1.00[AMR][1000 genomes]
rs59527941	1.00[AMR][1000 genomes]
rs7323401	1.00[AMR][1000 genomes]
rs7334432	1.00[AMR][1000 genomes]
rs7334580	1.00[AMR][1000 genomes]
rs7996918	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051686	chr13:110283468-110362954	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1044855	chr13:110301572-110408608	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110352400-110357600	Weak transcription	Colonic Mucosa	Colon
2	chr13:110352800-110357600	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr13:110352800-110357600	Weak transcription	HMEC	breast
4	chr13:110353000-110357600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr13:110353200-110357600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr13:110356000-110359200	Genic enhancers	Dnd41	blood
7	chr13:110356800-110357600	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr13:110356800-110358000	Enhancers	Esophagus	oesophagus
9	chr13:110356800-110358600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
10	chr13:110356800-110358600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr13:110357000-110357600	Flanking Active TSS	A549	lung
12	chr13:110357000-110357800	Weak transcription	Spleen	Spleen
13	chr13:110357000-110358000	Flanking Active TSS	Hela-S3	cervix
14	chr13:110357000-110358800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
15	chr13:110357000-110359800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr13:110357000-110360600	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr13:110357200-110357600	Enhancers	NHEK	skin
18	chr13:110357200-110358000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr13:110357200-110358400	Enhancers	Adipose Nuclei	Adipose
20	chr13:110357200-110358400	Active TSS	Liver	Liver
21	chr13:110357200-110359800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr13:110357200-110359800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
23	chr13:110357200-110360600	Enhancers	Fetal Thymus	thymus
24	chr13:110357400-110357600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
25	chr13:110357400-110357800	Flanking Active TSS	Primary B cells from cord blood	blood
26	chr13:110357400-110357800	Enhancers	Primary T cells from cord blood	blood
27	chr13:110357400-110357800	Flanking Active TSS	Primary hematopoietic stem cells	blood
28	chr13:110357400-110358000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
29	chr13:110357400-110358000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr13:110357400-110358000	Flanking Active TSS	Duodenum Mucosa	Duodenum
31	chr13:110357400-110358400	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr13:110357400-110360200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links