Variant report

Variant	rs7334580
Chromosome Location	chr13:110381574-110381575
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:110364981..110367185-chr13:110381233..110382839,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11069795	0.84[YRI][hapmap]
rs11069796	0.84[YRI][hapmap]
rs3887823	1.00[AMR][1000 genomes]
rs58060899	1.00[AMR][1000 genomes]
rs58185501	1.00[AMR][1000 genomes]
rs58781450	1.00[AMR][1000 genomes]
rs59527941	1.00[AMR][1000 genomes]
rs7323401	1.00[AMR][1000 genomes]
rs7334432	1.00[AMR][1000 genomes]
rs7996918	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044855	chr13:110301572-110408608	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110373000-110382000	Enhancers	Liver	Liver
2	chr13:110375000-110381600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr13:110377400-110382200	Transcr. at gene 5' and 3'	Dnd41	blood
4	chr13:110378200-110381600	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr13:110378200-110381800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr13:110378400-110383000	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr13:110378400-110386200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr13:110378600-110381800	Enhancers	Fetal Muscle Leg	muscle
9	chr13:110378600-110383600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr13:110380400-110381600	Enhancers	Adipose Nuclei	Adipose
11	chr13:110380400-110382000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr13:110380400-110382600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr13:110380600-110382000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr13:110380600-110382000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr13:110380600-110382200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr13:110380600-110382200	Enhancers	Fetal Kidney	kidney
17	chr13:110380600-110382600	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr13:110380800-110382200	Enhancers	Brain Germinal Matrix	brain
19	chr13:110380800-110382200	Bivalent Enhancer	Fetal Stomach	stomach
20	chr13:110381000-110381600	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr13:110381000-110381600	Bivalent Enhancer	Stomach Smooth Muscle	stomach
22	chr13:110381000-110381800	Enhancers	Muscle Satellite Cultured Cells	--
23	chr13:110381000-110382000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr13:110381000-110382200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr13:110381000-110382200	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr13:110381000-110382400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr13:110381000-110382400	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr13:110381000-110382400	Enhancers	Placenta Amnion	Placenta Amnion
29	chr13:110381000-110382600	Enhancers	Fetal Thymus	thymus
30	chr13:110381200-110381600	Enhancers	NH-A	brain
31	chr13:110381200-110381800	Enhancers	H9 Cell Line	embryonic stem cell
32	chr13:110381200-110381800	Enhancers	Brain Angular Gyrus	brain
33	chr13:110381200-110381800	Flanking Active TSS	Brain Anterior Caudate	brain
34	chr13:110381200-110381800	Enhancers	Brain Inferior Temporal Lobe	brain
35	chr13:110381200-110381800	Flanking Active TSS	Brain Substantia Nigra	brain
36	chr13:110381200-110382000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
37	chr13:110381200-110382000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr13:110381200-110382000	Enhancers	Fetal Lung	lung
39	chr13:110381200-110382200	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr13:110381200-110382200	Enhancers	iPS-18 Cell Line	embryonic stem cell
41	chr13:110381200-110382200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr13:110381200-110382200	Enhancers	Fetal Heart	heart
43	chr13:110381200-110382400	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr13:110381200-110382400	Enhancers	HUES6 Cell Line	embryonic stem cell
45	chr13:110381200-110382600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr13:110381400-110381800	Active TSS	Brain Cingulate Gyrus	brain
47	chr13:110381400-110381800	Flanking Active TSS	Brain Hippocampus Middle	brain
48	chr13:110381400-110381800	Bivalent Enhancer	Fetal Brain Female	brain
49	chr13:110381400-110382000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr13:110381400-110382000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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