Variant report

Variant	rs3887823
Chromosome Location	chr13:110358509-110358510
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:110357158..110358883-chr13:110360873..110363213,2	MCF-7	breast:
2	chr13:110228879..110230744-chr13:110356982..110359196,2	MCF-7	breast:
3	chr13:110355569..110358710-chr13:110439541..110442319,3	MCF-7	breast:
4	chr13:110351496..110354241-chr13:110356886..110361111,4	K562	blood:
5	chr13:110357646..110363489-chr13:110367118..110372091,7	K562	blood:
6	chr13:110357966..110359817-chr13:110436770..110439771,3	K562	blood:
7	chr13:110352177..110356373-chr13:110357272..110361111,4	K562	blood:
8	chr13:110350767..110352519-chr13:110358277..110361113,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185950	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs56256197	0.89[AFR][1000 genomes]
rs58060899	1.00[AMR][1000 genomes]
rs58185501	1.00[AMR][1000 genomes]
rs58781450	1.00[AMR][1000 genomes]
rs59527941	1.00[AMR][1000 genomes]
rs7323401	1.00[AMR][1000 genomes]
rs7334432	1.00[AMR][1000 genomes]
rs7334580	1.00[AMR][1000 genomes]
rs7996918	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051686	chr13:110283468-110362954	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1044855	chr13:110301572-110408608	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110356000-110359200	Genic enhancers	Dnd41	blood
2	chr13:110356800-110358600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
3	chr13:110356800-110358600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr13:110357000-110358800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
5	chr13:110357000-110359800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr13:110357000-110360600	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr13:110357200-110359800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr13:110357200-110359800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
9	chr13:110357200-110360600	Enhancers	Fetal Thymus	thymus
10	chr13:110357400-110360200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr13:110357800-110358600	Enhancers	Lung	lung
12	chr13:110357800-110358600	Enhancers	Spleen	Spleen
13	chr13:110357800-110359000	Enhancers	Primary hematopoietic stem cells	blood
14	chr13:110357800-110360200	Enhancers	Primary B cells from cord blood	blood
15	chr13:110358000-110359000	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr13:110358000-110359200	Weak transcription	A549	lung
17	chr13:110358000-110359800	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr13:110358000-110359800	Enhancers	Hela-S3	cervix
19	chr13:110358000-110361000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr13:110358000-110361000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr13:110358400-110358600	Flanking Active TSS	Liver	Liver
22	chr13:110358400-110358800	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr13:110358400-110359400	Enhancers	K562	blood

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