Variant report

Variant	rs56256197
Chromosome Location	chr13:110357944-110357945
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:110357158..110358883-chr13:110360873..110363213,2	MCF-7	breast:
2	chr13:110228879..110230744-chr13:110356982..110359196,2	MCF-7	breast:
3	chr13:110355569..110358710-chr13:110439541..110442319,3	MCF-7	breast:
4	chr13:110351496..110354241-chr13:110356886..110361111,4	K562	blood:
5	chr13:110357646..110363489-chr13:110367118..110372091,7	K562	blood:
6	chr13:110352177..110356373-chr13:110357272..110361111,4	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11069795	0.98[EUR][1000 genomes]
rs11069796	0.97[EUR][1000 genomes]
rs11069798	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11069799	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11069802	0.85[ASN][1000 genomes]
rs11617494	0.85[ASN][1000 genomes]
rs11617495	0.85[ASN][1000 genomes]
rs11618612	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12427884	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12428305	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12428361	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12429168	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1330542	0.96[EUR][1000 genomes]
rs1411551	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1888247	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3887823	0.89[AFR][1000 genomes]
rs55832977	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60375720	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61964786	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61964792	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7322690	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051686	chr13:110283468-110362954	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1044855	chr13:110301572-110408608	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110356000-110359200	Genic enhancers	Dnd41	blood
2	chr13:110356800-110358000	Enhancers	Esophagus	oesophagus
3	chr13:110356800-110358600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
4	chr13:110356800-110358600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr13:110357000-110358000	Flanking Active TSS	Hela-S3	cervix
6	chr13:110357000-110358800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
7	chr13:110357000-110359800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr13:110357000-110360600	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr13:110357200-110358000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr13:110357200-110358400	Enhancers	Adipose Nuclei	Adipose
11	chr13:110357200-110358400	Active TSS	Liver	Liver
12	chr13:110357200-110359800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr13:110357200-110359800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
14	chr13:110357200-110360600	Enhancers	Fetal Thymus	thymus
15	chr13:110357400-110358000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
16	chr13:110357400-110358000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr13:110357400-110358000	Flanking Active TSS	Duodenum Mucosa	Duodenum
18	chr13:110357400-110358400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr13:110357400-110360200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr13:110357600-110358000	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr13:110357600-110358000	Enhancers	Colonic Mucosa	Colon
22	chr13:110357600-110358000	Enhancers	Rectal Mucosa Donor 29	rectum
23	chr13:110357600-110358000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
24	chr13:110357600-110358000	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr13:110357600-110358000	Enhancers	HMEC	breast
26	chr13:110357600-110358200	Enhancers	Placenta	Placenta
27	chr13:110357800-110358000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr13:110357800-110358000	Flanking Active TSS	A549	lung
29	chr13:110357800-110358000	Active TSS	NHEK	skin
30	chr13:110357800-110358600	Enhancers	Lung	lung
31	chr13:110357800-110358600	Enhancers	Spleen	Spleen
32	chr13:110357800-110359000	Enhancers	Primary hematopoietic stem cells	blood
33	chr13:110357800-110360200	Enhancers	Primary B cells from cord blood	blood

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