Variant report

Variant	rs1411551
Chromosome Location	chr13:110373035-110373036
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:110372207..110373827-chr13:110434766..110436789,2	K562	blood:
2	chr13:110355348..110357050-chr13:110370423..110373303,2	K562	blood:
3	chr13:110372327..110374107-chr13:110434766..110436742,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11069795	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11069796	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11069798	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11069799	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11069802	0.90[ASN][1000 genomes]
rs11617494	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11617495	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11618612	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12427884	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12428305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12428361	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12429168	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1330542	0.88[EUR][1000 genomes]
rs1888247	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55832977	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56256197	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60375720	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61964786	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61964792	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7322690	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044855	chr13:110301572-110408608	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	esv3412921	chr13:110372931-110373165	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110368600-110377600	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr13:110369200-110376800	Weak transcription	Adipose Nuclei	Adipose
3	chr13:110370200-110374000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr13:110371400-110373600	Enhancers	Brain Substantia Nigra	brain
5	chr13:110371800-110373600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr13:110371800-110373600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr13:110372000-110373200	Enhancers	Primary hematopoietic stem cells	blood
8	chr13:110372000-110373400	Enhancers	K562	blood
9	chr13:110372000-110373600	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr13:110372000-110373600	Enhancers	Brain Anterior Caudate	brain
11	chr13:110372200-110373600	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr13:110372200-110374200	Enhancers	Brain Germinal Matrix	brain
13	chr13:110372200-110374200	Enhancers	HepG2	liver
14	chr13:110372400-110373400	Enhancers	Brain Hippocampus Middle	brain
15	chr13:110372400-110373600	Enhancers	Stomach Mucosa	stomach
16	chr13:110372600-110377800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr13:110372800-110373200	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr13:110372800-110374200	Enhancers	Dnd41	blood
19	chr13:110373000-110373200	Enhancers	Brain Cingulate Gyrus	brain
20	chr13:110373000-110373400	Flanking Active TSS	A549	lung
21	chr13:110373000-110373600	Enhancers	Brain Angular Gyrus	brain
22	chr13:110373000-110373600	Enhancers	Fetal Lung	lung
23	chr13:110373000-110382000	Enhancers	Liver	Liver

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