Variant report

Variant	rs1888247
Chromosome Location	chr13:110366786-110366787
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:110364981..110367185-chr13:110381233..110382839,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11069795	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs11069796	1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap];0.93[EUR][1000 genomes]
rs11069798	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11069799	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11069802	0.88[ASN][1000 genomes]
rs11617494	0.88[ASN][1000 genomes]
rs11617495	0.88[ASN][1000 genomes]
rs11618612	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12427884	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12428305	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12428361	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12429168	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1330542	0.92[EUR][1000 genomes]
rs1411551	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3887823	1.00[YRI][hapmap]
rs55832977	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56256197	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60375720	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61964786	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61964792	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7322690	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044855	chr13:110301572-110408608	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110359000-110367800	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr13:110359800-110368400	Weak transcription	Hela-S3	cervix
3	chr13:110360000-110367800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:110360600-110368000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr13:110361000-110368200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr13:110361000-110368200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr13:110363600-110367600	Weak transcription	Liver	Liver
8	chr13:110364800-110368400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr13:110364800-110368400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr13:110365000-110366800	Weak transcription	Dnd41	blood
11	chr13:110365000-110368200	Weak transcription	K562	blood
12	chr13:110365000-110370200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr13:110365000-110372000	Weak transcription	Fetal Lung	lung
14	chr13:110365200-110368200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr13:110366200-110367600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr13:110366400-110367600	Weak transcription	Primary monocytes fromperipheralblood	blood

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