Variant report

Variant	rs12428361
Chromosome Location	chr13:110368764-110368765
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:110367353..110370316-chr13:110433831..110435383,2	K562	blood:
2	chr13:110368698..110370963-chr13:110374114..110375940,2	K562	blood:
3	chr13:110357646..110363489-chr13:110367118..110372091,7	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11069795	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11069796	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11069798	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11069799	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11069802	0.90[ASN][1000 genomes]
rs11617494	0.90[ASN][1000 genomes]
rs11617495	0.90[ASN][1000 genomes]
rs11618612	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12427884	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12428305	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12429168	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1330542	0.88[EUR][1000 genomes]
rs1411551	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1888247	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55832977	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56256197	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60375720	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61964786	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61964792	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7322690	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044855	chr13:110301572-110408608	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110365000-110370200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr13:110365000-110372000	Weak transcription	Fetal Lung	lung
3	chr13:110367000-110369400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr13:110367400-110372200	Weak transcription	Ovary	ovary
5	chr13:110367600-110369000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr13:110367600-110369400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr13:110367600-110369600	Enhancers	Liver	Liver
8	chr13:110367800-110369200	Enhancers	Adipose Nuclei	Adipose
9	chr13:110367800-110369400	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr13:110368000-110369000	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr13:110368200-110368800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr13:110368200-110368800	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr13:110368200-110368800	Enhancers	K562	blood
14	chr13:110368400-110369000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr13:110368400-110371200	Weak transcription	A549	lung
16	chr13:110368400-110372000	Strong transcription	Dnd41	blood
17	chr13:110368600-110371800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr13:110368600-110371800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr13:110368600-110377600	Weak transcription	Primary neutrophils fromperipheralblood	blood

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