Variant report

Variant	rs1330542
Chromosome Location	chr13:110355414-110355415
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:110355348..110357050-chr13:110370423..110373303,2	K562	blood:
2	chr13:110352177..110356373-chr13:110357272..110361111,4	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11069795	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11069796	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11069798	0.87[EUR][1000 genomes]
rs11069799	0.95[EUR][1000 genomes]
rs11618612	0.95[EUR][1000 genomes]
rs12427884	0.95[CEU][hapmap];0.81[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs12428305	0.88[EUR][1000 genomes]
rs12428361	0.88[EUR][1000 genomes]
rs12429168	0.88[EUR][1000 genomes]
rs1411551	0.88[EUR][1000 genomes]
rs1888247	0.92[EUR][1000 genomes]
rs55832977	0.88[EUR][1000 genomes]
rs56256197	0.96[EUR][1000 genomes]
rs60375720	0.88[EUR][1000 genomes]
rs61964786	0.95[EUR][1000 genomes]
rs61964792	0.88[EUR][1000 genomes]
rs7322690	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051686	chr13:110283468-110362954	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1044855	chr13:110301572-110408608	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110347600-110356800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr13:110352400-110357600	Weak transcription	Colonic Mucosa	Colon
3	chr13:110352800-110356800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr13:110352800-110356800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr13:110352800-110356800	Weak transcription	A549	lung
6	chr13:110352800-110357400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr13:110352800-110357600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr13:110352800-110357600	Weak transcription	HMEC	breast
9	chr13:110353000-110356200	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr13:110353000-110357600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr13:110353200-110356400	Weak transcription	Fetal Intestine Small	intestine
12	chr13:110353200-110356600	Weak transcription	Primary B cells from cord blood	blood
13	chr13:110353200-110357200	Weak transcription	Fetal Thymus	thymus
14	chr13:110353200-110357400	Weak transcription	Primary T cells from cord blood	blood
15	chr13:110353200-110357600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr13:110353600-110356600	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr13:110353800-110356000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr13:110353800-110356800	Weak transcription	Duodenum Mucosa	Duodenum
19	chr13:110354000-110356600	Weak transcription	Primary hematopoietic stem cells	blood
20	chr13:110355000-110356000	Weak transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links