Variant report

No.	Distal block	Cell Line	Cell type
1	chr13:110361442..110364296-chr13:110437394..110440161,2	K562	blood:
2	chr13:110359448..110362939-chr13:110431472..110434391,4	K562	blood:
3	chr13:110357646..110363489-chr13:110367118..110372091,7	K562	blood:
4	chr13:110357158..110358883-chr13:110360873..110363213,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185950	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11069795	0.96[EUR][1000 genomes]
rs11069796	0.96[EUR][1000 genomes]
rs11069798	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11069802	0.85[ASN][1000 genomes]
rs11617494	0.85[ASN][1000 genomes]
rs11617495	0.85[ASN][1000 genomes]
rs11618612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12427884	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12428305	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12428361	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12429168	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1330542	0.95[EUR][1000 genomes]
rs1411551	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1888247	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55832977	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56256197	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60375720	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61964786	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61964792	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7322690	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051686	chr13:110283468-110362954	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1044855	chr13:110301572-110408608	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv9107	chr13:110361510-110363458	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110358600-110363200	Weak transcription	Liver	Liver
2	chr13:110359000-110367800	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr13:110359800-110368400	Weak transcription	Hela-S3	cervix
4	chr13:110360000-110367800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:110360600-110364600	Weak transcription	K562	blood
6	chr13:110360600-110368000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr13:110361000-110363200	Enhancers	Dnd41	blood
8	chr13:110361000-110368200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr13:110361000-110368200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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