Variant report

Variant	rs7982022
Chromosome Location	chr13:54049003-54049004
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10161731	0.82[EUR][1000 genomes]
rs1017539	0.81[EUR][1000 genomes]
rs1348466	0.85[EUR][1000 genomes]
rs1443919	0.85[EUR][1000 genomes]
rs1816841	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1838278	0.82[EUR][1000 genomes]
rs7995138	0.80[EUR][1000 genomes]
rs7997288	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7997746	0.81[EUR][1000 genomes]
rs9536424	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54044800-54050800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:54045800-54050400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:54048400-54049400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr13:54048600-54049200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr13:54048600-54053800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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