Variant report
| Variant | rs7997288 |
|---|---|
| Chromosome Location | chr13:54039265-54039266 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10161731 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1017539 | 0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11618497 | 0.81[EUR][1000 genomes] |
| rs1342669 | 0.81[EUR][1000 genomes] |
| rs1348466 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1373273 | 0.80[ASN][1000 genomes] |
| rs1373281 | 0.81[EUR][1000 genomes] |
| rs1443905 | 0.81[EUR][1000 genomes] |
| rs1443919 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1838278 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2165985 | 0.84[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs2408860 | 0.99[ASN][1000 genomes] |
| rs4884463 | 0.80[ASN][1000 genomes] |
| rs7322098 | 0.80[ASN][1000 genomes] |
| rs7326482 | 0.82[ASN][1000 genomes] |
| rs7982022 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs7987501 | 0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7995138 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7997746 | 0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs8001044 | 0.81[EUR][1000 genomes] |
| rs9316613 | 0.81[EUR][1000 genomes] |
| rs9536405 | 0.81[EUR][1000 genomes] |
| rs9536406 | 0.81[EUR][1000 genomes] |
| rs9596807 | 0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1050969 | chr13:53665927-54064861 | Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:54037800-54047800 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
