Variant report

Variant	rs1443905
Chromosome Location	chr13:53936286-53936287
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:53934898..53936614-chr13:53941465..53943222,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000220990	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10161731	0.80[EUR][1000 genomes]
rs1156006	0.87[ASN][1000 genomes]
rs11618497	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1342669	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1373273	0.90[ASN][1000 genomes]
rs1373276	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1373277	0.88[ASN][1000 genomes]
rs1373281	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1418617	0.88[ASN][1000 genomes]
rs2165985	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2408858	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2813573	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4884411	0.88[ASN][1000 genomes]
rs7322098	0.90[ASN][1000 genomes]
rs7328151	0.98[ASN][1000 genomes]
rs7329909	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7332332	0.80[ASN][1000 genomes]
rs7981317	0.82[EUR][1000 genomes]
rs7985119	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7987501	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7995138	0.81[EUR][1000 genomes]
rs7997288	0.81[EUR][1000 genomes]
rs7997746	0.82[EUR][1000 genomes]
rs8001044	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8002970	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9316613	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9527077	0.80[ASN][1000 genomes]
rs9536405	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9536406	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9536410	0.80[ASN][1000 genomes]
rs9568838	0.87[ASN][1000 genomes]
rs9568839	0.87[ASN][1000 genomes]
rs9596807	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1040236	chr13:53928195-53955060	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1051184	chr13:53928195-53956469	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53935600-53937600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr13:53936200-53937400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr13:53936200-53937800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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