Variant report

Variant	rs2165985
Chromosome Location	chr13:53976774-53976775
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10161731	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11618497	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1342669	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1348466	0.81[EUR][1000 genomes]
rs1373273	1.00[ASN][1000 genomes]
rs1373276	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1373281	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1443905	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1443908	0.88[ASN][1000 genomes]
rs1443919	0.81[EUR][1000 genomes]
rs2408858	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2813573	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4883678	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs7322098	1.00[ASN][1000 genomes]
rs7328151	0.92[ASN][1000 genomes]
rs7329909	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7332332	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7985119	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7987501	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7992723	0.82[CHB][hapmap]
rs7995138	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7997288	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7997746	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8001044	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8002970	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9316613	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9527077	0.87[ASN][1000 genomes]
rs9536405	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9536406	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9536410	0.88[ASN][1000 genomes]
rs9536411	0.88[ASN][1000 genomes]
rs9568848	0.88[ASN][1000 genomes]
rs9596807	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53972400-53983200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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