Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1342669	0.80[ASN][1000 genomes]
rs1373273	0.88[ASN][1000 genomes]
rs1373281	0.82[ASN][1000 genomes]
rs1443908	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1443917	0.91[ASN][1000 genomes]
rs2165985	0.88[ASN][1000 genomes]
rs2813573	0.82[ASN][1000 genomes]
rs4883678	0.81[CHB][hapmap]
rs4884463	0.88[ASN][1000 genomes]
rs7322098	0.88[ASN][1000 genomes]
rs7326482	0.88[ASN][1000 genomes]
rs7328151	0.82[ASN][1000 genomes]
rs7332332	0.98[ASN][1000 genomes]
rs7987501	0.80[ASN][1000 genomes]
rs7992723	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs9316613	0.80[ASN][1000 genomes]
rs9527077	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9536405	0.80[ASN][1000 genomes]
rs9536406	0.80[ASN][1000 genomes]
rs9536410	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9568848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9536411	NEK5	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53972400-53983200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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