Variant report

Variant	rs2813573
Chromosome Location	chr13:53943333-53943334
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr13:53943222-53943334	MCF-7	breast:	n/a	n/a
2	RAD21	chr13:53943172-53943357	GM12878	blood:	n/a	n/a
3	RAD21	chr13:53943071-53943509	H1-hESC	embryonic stem cell:	n/a	n/a
4	CTCF	chr13:53943161-53943418	Medullo	brain:	n/a	n/a
5	CTCF	chr13:53943174-53943418	H1-hESC	embryonic stem cell:	n/a	n/a
6	RAD21	chr13:53943057-53943474	H1-hESC	embryonic stem cell:	n/a	n/a
7	CTCF	chr13:53943122-53943379	H1-hESC	embryonic stem cell:	n/a	n/a
8	RAD21	chr13:53943075-53943470	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
ENSG00000220990	TF binding region

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1156006	0.85[ASN][1000 genomes]
rs11618497	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1342669	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1373273	0.92[ASN][1000 genomes]
rs1373276	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1373277	0.86[ASN][1000 genomes]
rs1373281	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1418617	0.86[ASN][1000 genomes]
rs1443905	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1443908	0.82[ASN][1000 genomes]
rs2165985	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2408858	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4884411	0.86[ASN][1000 genomes]
rs7322098	0.92[ASN][1000 genomes]
rs7328151	1.00[ASN][1000 genomes]
rs7329909	0.94[ASN][1000 genomes]
rs7332332	0.82[ASN][1000 genomes]
rs7985119	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7987501	0.83[ASN][1000 genomes]
rs8001044	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8002970	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9316613	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9527077	0.82[ASN][1000 genomes]
rs9536405	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9536406	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9536410	0.82[ASN][1000 genomes]
rs9536411	0.82[ASN][1000 genomes]
rs9568838	0.85[ASN][1000 genomes]
rs9568839	0.85[ASN][1000 genomes]
rs9568848	0.82[ASN][1000 genomes]
rs9596807	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1040236	chr13:53928195-53955060	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1051184	chr13:53928195-53956469	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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