Variant report

Variant	rs4884411
Chromosome Location	chr13:53914738-53914739
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1156006	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11618497	0.87[ASN][1000 genomes]
rs1322949	0.82[CHB][hapmap]
rs1322951	0.82[CHB][hapmap]
rs1342669	0.87[ASN][1000 genomes]
rs1373276	0.88[ASN][1000 genomes]
rs1373277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1373281	0.86[ASN][1000 genomes]
rs1418617	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1443905	0.88[ASN][1000 genomes]
rs1443914	0.84[AFR][1000 genomes]
rs1530399	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1923771	0.82[CHB][hapmap]
rs2053609	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2197303	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2408858	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2813573	0.86[ASN][1000 genomes]
rs4883678	0.81[JPT][hapmap]
rs7328151	0.86[ASN][1000 genomes]
rs7329909	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7336192	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7985119	0.88[ASN][1000 genomes]
rs7985545	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7992723	0.86[CHD][hapmap]
rs8001044	0.88[ASN][1000 genomes]
rs8002970	0.88[ASN][1000 genomes]
rs9316613	0.87[ASN][1000 genomes]
rs9527057	0.82[CHB][hapmap]
rs9536378	0.82[CHB][hapmap]
rs9536405	0.87[ASN][1000 genomes]
rs9536406	0.87[ASN][1000 genomes]
rs9568838	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9568839	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2756368	chr13:53824599-53923599	Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53909400-53916800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:53911400-53916800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr13:53912000-53917000	Weak transcription	Brain Germinal Matrix	brain
4	chr13:53914200-53914800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
5	chr13:53914400-53918400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr13:53914600-53915200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr13:53914600-53915800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr13:53914600-53916800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell

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