Variant report

Variant	rs1373281
Chromosome Location	chr13:53939332-53939333
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10161731	0.80[EUR][1000 genomes]
rs1156006	0.85[ASN][1000 genomes]
rs11618497	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1342669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1373273	0.92[ASN][1000 genomes]
rs1373276	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1373277	0.86[ASN][1000 genomes]
rs1418617	0.86[ASN][1000 genomes]
rs1443905	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1443908	0.82[ASN][1000 genomes]
rs2165985	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2408858	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2813573	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4884411	0.86[ASN][1000 genomes]
rs7322098	0.92[ASN][1000 genomes]
rs7328151	1.00[ASN][1000 genomes]
rs7329909	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7332332	0.82[ASN][1000 genomes]
rs7981317	0.81[EUR][1000 genomes]
rs7985119	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7987501	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7995138	0.81[EUR][1000 genomes]
rs7997288	0.81[EUR][1000 genomes]
rs7997746	0.82[EUR][1000 genomes]
rs8001044	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8002970	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9316613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9527077	0.82[ASN][1000 genomes]
rs9536405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9536406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9536410	0.82[ASN][1000 genomes]
rs9536411	0.82[ASN][1000 genomes]
rs9568838	0.85[ASN][1000 genomes]
rs9568839	0.85[ASN][1000 genomes]
rs9568848	0.82[ASN][1000 genomes]
rs9596807	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1040236	chr13:53928195-53955060	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1051184	chr13:53928195-53956469	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53937600-53939400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr13:53937800-53939400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr13:53937800-53939400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr13:53938000-53939400	Enhancers	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links