Variant report

Variant	rs7987501
Chromosome Location	chr13:53983445-53983446
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10161731	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1017539	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11618497	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1342669	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1348466	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1373273	0.91[ASN][1000 genomes]
rs1373276	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1373281	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1443905	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1443908	0.80[ASN][1000 genomes]
rs1443919	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2165985	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2408858	0.88[EUR][1000 genomes]
rs2408860	0.86[ASN][1000 genomes]
rs2813573	0.83[ASN][1000 genomes]
rs4883678	0.80[CEU][hapmap];0.82[CHB][hapmap];0.80[JPT][hapmap]
rs7322098	0.91[ASN][1000 genomes]
rs7328151	0.83[ASN][1000 genomes]
rs7985119	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7992723	0.82[CHB][hapmap]
rs7995138	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7997288	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7997746	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8001044	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8002970	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9316613	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9536405	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9536406	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9536411	0.80[ASN][1000 genomes]
rs9568848	0.80[ASN][1000 genomes]
rs9596807	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53980000-53983600	Weak transcription	Gastric	stomach
2	chr13:53983200-53984000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr13:53983400-53983800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:53983400-53983800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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