Variant report
| Variant | rs7322098 |
|---|---|
| Chromosome Location | chr13:53974155-53974156 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10161731 | 0.80[ASN][1000 genomes] |
| rs11618497 | 0.89[ASN][1000 genomes] |
| rs1342669 | 0.90[ASN][1000 genomes] |
| rs1373273 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1373276 | 0.90[ASN][1000 genomes] |
| rs1373281 | 0.92[ASN][1000 genomes] |
| rs1443905 | 0.90[ASN][1000 genomes] |
| rs1443908 | 0.88[ASN][1000 genomes] |
| rs2165985 | 1.00[ASN][1000 genomes] |
| rs2408858 | 0.86[ASN][1000 genomes] |
| rs2813573 | 0.92[ASN][1000 genomes] |
| rs4883678 | 0.95[CHB][hapmap];0.91[JPT][hapmap] |
| rs7328151 | 0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7329909 | 0.86[ASN][1000 genomes] |
| rs7332332 | 0.88[ASN][1000 genomes] |
| rs7985119 | 0.90[ASN][1000 genomes] |
| rs7987501 | 0.91[ASN][1000 genomes] |
| rs7992723 | 0.85[CEU][hapmap];0.82[CHB][hapmap] |
| rs7995138 | 0.83[ASN][1000 genomes] |
| rs7997288 | 0.80[ASN][1000 genomes] |
| rs7997746 | 0.84[ASN][1000 genomes] |
| rs8001044 | 0.90[ASN][1000 genomes] |
| rs8002970 | 0.90[ASN][1000 genomes] |
| rs9316613 | 0.90[ASN][1000 genomes] |
| rs9527077 | 0.87[ASN][1000 genomes] |
| rs9536405 | 0.90[ASN][1000 genomes] |
| rs9536406 | 0.90[ASN][1000 genomes] |
| rs9536410 | 0.88[ASN][1000 genomes] |
| rs9536411 | 0.88[ASN][1000 genomes] |
| rs9568848 | 0.88[ASN][1000 genomes] |
| rs9596807 | 0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1050969 | chr13:53665927-54064861 | Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:53972400-53983200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
