Variant report

Variant	rs4884463
Chromosome Location	chr13:54035129-54035130
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10161731	0.80[ASN][1000 genomes]
rs1443908	0.88[ASN][1000 genomes]
rs1443917	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4883678	0.81[CHB][hapmap]
rs7326482	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7332332	0.86[ASN][1000 genomes]
rs7992723	0.95[CHB][hapmap]
rs7997288	0.80[ASN][1000 genomes]
rs9527077	0.88[ASN][1000 genomes]
rs9536410	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9536411	0.88[ASN][1000 genomes]
rs9568848	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54034800-54035200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:54034800-54035200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr13:54034800-54035200	Enhancers	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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